Gene detail

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Gene detail information of Glyur001683s00043930.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G27470.1	3.00E-44	RING membrane-anchor 3
NR	XP_004514340.1	3.40E-133	PREDICTED: E3 ubiquitin-protein ligase RMA3-like isoform X1 [Cicer arietinum]
Swissprot	tr\|O64425\|RMA1_ARATH	3.00E-52	E3 ubiquitin-protein ligase RMA1
trEMBL	tr\|I3SP62\|I3SP62_LOTJA	2.00E-127	Uncharacterized protein {ECO:0000313\|EMBL:AFK42054.1}

Sequence

Transcript Sequence

>Glyur001683s00043930.1
AAAATAATTAAATATATCCATGATGGCACCACCACATTCCTACTCATTCTTTTCCGTAACATAATCTTCTTTCCACATTTTTCTCTCCTCCATTGCTTCATTCTCAACCCAATTCTCTCACACCCTCTACCCCTTTTTCTTCTATTTTCATTTTTCTCTTCCTTTGGCGGACATCTGAGTTTGACTATTCTTTTTGGCAAAGGGTATATTGTTGTGGGAGAAAATTCAATGGAATCTGCATACTTTGATTCTGATGAGGATGTCTCACTAAGTCAGAAATTGAAATTGAAATCCACTACAGTAAAGACAGCAATCCCAAGTAGTGAAAATGGTTGCTTTGATTGCAATATTTGCTTGGAATCAGCACATGAACCTGTGGTCACTCTCTGCGGTCACCTCTATTGTTGGCCATGCATGTACAAGTGGCTTAATGTTCAAAGCTCACCTGTTGAACCAGAACAGCAGCAGACATGTCCAGTTTGTAAAGCTGAGATCTCCCGTACTTCATTAGTCCCTCTTTATGGCCGCGGAAAATTGAATCATGAAACCGAAGCCAAGAAACTCCAAATGGGTTTGGGAATACCTCATAGACCACCTCCTTACAACTTGAATGCTATGTTAAGTTCTAATCATTCCTCAAATTCATATCATGGGGAGCAACTCCATCCAAGTAGTTACTTCCAATCACAATCACGTCTATTTCATCATCAGCACTGCTTCCCTCACCTTTATAGAGGTCATGGTGCCAATGGATTGCCCTATCTTGGGGGTGCTGCTATGACTAGTTTCTTTAATCCTATGATTGGTATGTTTGGGGAGNTGGTCTTGACAAGGATTTTTGGAGTCTCGGATCCAAATTTGTTTTCTTACCCTCATAATGGAAGTTCCAGTCCAAGGATGAGAAGGCAAGAGATGCAGATTGACAAATCTCTAAATAGAGTTTCTATCTTTCTCTTATGTTGTATCATTTTGTGTCTTCTCTTATTT

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold01683	40820	42826	-

Gene family

Gene family	subfamily
Ubiquitin Family	RING

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K10666	RNF5	EC:2.3.2.27	Protein processing in endoplasmic reticulum	map04141

Gene Ontology

molecular_function

GO:0005515 protein binding

GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001683s00043930.1	PF13639.1	zf-RING_2	114	162	6.30E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.074
SRR1783600	control	0.111
SRR1783602	moderate drought stress	0.617
SRR1811619	moderate drought stress	0.608

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.831
DRR006520	Root Summer glycyrrhizin high producing strain	1.728
DRR006521	Root Winter glycyrrhizin high producing strain	1.921
DRR006522	Root Winter glycyrrhizin high producing strain	1.877
DRR006523	Root Summer glycyrrhizin low producing strain	1.219
DRR006524	Root Summer glycyrrhizin low producing strain	1.003
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	1.145
SRR2868004	Drought Stress(Tissue:root)	1.140
SRR2967015	Control (Tissue:root)	1.088

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.203
SRR9715740	Leave	0.666
SRR9715741	Leave	0.497
SRR9715739	Root	2.260
SRR9715742	Root	0.983
SRR9715743	Root	1.216

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.213
SRR8749028	MeJA induced 9h	0.951
SRR8749029	MeJA induced 9h	0.471
SRR8749030	Uninduced	0.581
SRR8749031	Uninduced	1.006
SRR8749032	Uninduced	0.603

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	1.919
SRR8400027	Control-Root	0.998