Gene detail information of Glyur001691s00029479.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G03965.19.00E-30RING/U-box superfamily protein
NRXP_003610487.13.30E-96hypothetical protein MTR_4g132760 [Medicago truncatula]
trEMBLtr|G7JKF7|G7JKF7_MEDTR1.00E-96Zinc finger, C3HC4 type (RING finger) protein {ECO:0000313|EMBL:AES92684.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold016914118841829-


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001691s00029479.1PF13920.1zf-C3HC4_31622081.20E-11


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control4.858
SRR1783600control4.658
SRR1783602moderate drought stress6.860
SRR1811619moderate drought stress6.387

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain11.052
DRR006520Root Summer glycyrrhizin high producing strain11.586
DRR006521Root Winter glycyrrhizin high producing strain13.916
DRR006522Root Winter glycyrrhizin high producing strain13.489
DRR006523Root Summer glycyrrhizin low producing strain7.335
DRR006524Root Summer glycyrrhizin low producing strain7.231
DRR006525Leaf Summer glycyrrhizin high producing strain1.384
DRR006526Leaf Summer glycyrrhizin high producing strain1.216

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)28.158
SRR2868004Drought Stress(Tissue:root)27.152
SRR2967015Control (Tissue:root)25.379

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave2.569
SRR9715740Leave1.469
SRR9715741Leave2.143
SRR9715739Root6.097
SRR9715742Root1.754
SRR9715743Root3.073

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h2.378
SRR8749028MeJA induced 9h2.766
SRR8749029MeJA induced 9h13.344
SRR8749030Uninduced1.728
SRR8749031Uninduced3.983
SRR8749032Uninduced18.046

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root13.524
SRR8400027Control-Root14.291

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved