Gene detail information of Glyur001693s00041088.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G02205.2 | 2.00E-148 | Fatty acid hydroxylase superfamily |
| NR | XP_003625020.1 | 0 | Protein WAX2 [Medicago truncatula] |
| COG | YP_006441916.1 | 9.00E-09 | fatty acid hydroxylase [Turneriella parva DSM 21527] |
| Swissprot | tr|F4HVY0|CER1_ARATH | 1.00E-178 | Protein ECERIFERUM 1 |
| trEMBL | tr|G7KRL9|G7KRL9_MEDTR | 0 | Fatty acid hydroxylase superfamily protein {ECO:0000313|EMBL:AES81238.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01693 | 20878 | 31911 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K15404 | K15404, CER1 | EC:4.1.99.5 | Cutin, suberine and wax biosynthesis | map00073 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001693s00041088.1 | PF04116.8 | FA_hydroxylase | 94 | 188 | 2.00E-08 |
| Glyur001693s00041088.1 | PF12076.3 | Wax2_C | 392 | 543 | 5.00E-59 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.018 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.037 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.908 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.666 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.000 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.000 |
| SRR2967015 | Control (Tissue:root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 1.794 |
| SRR9715740 | Leave | 0.191 |
| SRR9715741 | Leave | 0.723 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.055 |
| SRR9715743 | Root | 0.018 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.041 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.375 |
| SRR8400027 | Control-Root | 0.079 |