Gene detail

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Gene detail information of Glyur001694s00031559.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT3G06500.1	Plant neutral invertase family protein
NR	XP_003529503.1	PREDICTED: alkaline/neutral invertase CINV2-like [Glycine max]
COG	YP_007129106.1	neutral invertase [Gloeocapsa sp. PCC 7428]
Swissprot	tr\|B9DFA8\|INVC_ARATH	Alkaline/neutral invertase C, mitochondrial {ECO:0000305} (Precursor)
trEMBL	tr\|I1KMM2\|I1KMM2_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA07G36440.1}

Sequence

Transcript Sequence

>Glyur001694s00031559.1
CTATTTTTTATTTTTTATTTATTTTCCCCTCTATACTATATATTATTTTGTTTCCATAGACATAGAAAAGTCGTAAATAAATAAAAGTCTTGATTCATTAACAGTCCAAAACTGTTTAATTTTCTGGGCTTTGGTTATTTTGATCATACAAATGACTACTGGTAGCTATATTGGAATTTCTACCATGAAGCCTTGTTGTAGAATACTGAGTAGCTGTAAAAGCCCATTGATTTCTGGGTTTTCTCCAACCAAGTTTAATGATTCAGCAATCATGGGAATCATGTCCAAATCACGCCATCTCAGCTCAACCCATCGCCATAGATATCATACCTGTAATACTCAGATTGTAGGGAATATACGTGTGACCAACCTGAATCGGAGAGATTTTAGCGTTTCCGATTCGAATTGGGCTCATTCTAGGAATTTTAGCACTAGTTTTTGTGTCCATATTGGTAGTGTTAGGCCTAGGGTTGTTTCCTTGATACCGAATGTAGCTTCAGATATTAGGAATCAGTCTACATCGGTTGATTCTCATGCTAATGACACTAGCTTTGAGAAGATTTACATTCAAAATGGTTTGAATGCAAAGCCCTTGGTATTTGAAAGAATTGAGACAGATCATGGTAAATTGGAGGAAGTCTCTAGGGAAAGATGTGAAGGGTCAGATGTAAATATAGATAATTTGAATGATTTGAGTGAGGACAAGGTTGAGAGGAAACTGTCTGNGATTGAAAAGGAAGCTTGGAAGTTGCTTCGAGGTGCTCTTGTCACTTACTGTGGGAATCCGGTTGGGACTGTTGCAGCTAATGATCCTGCCGACAAACAACCGCTGAATTATGATCAAGTCTTTATCCGCGATTTTGTTCCCTCGGCGCTTGCCTTTCTGCTCAATGGTGAAGGGGAAATTGTCAAGAACTTTCTACTTCACACATTGCAATTACAGAGTTGGGAGAAGACTGTTGACTGCTACAGCCCAGGGCAAGGGTTGATGCCAGCAAGCTTCAAGGTTAGAACTGTCCCTCTTGATGGAAGCAACGAAGCATTTGAGGATGTTTCGGATCCTGATTTTGGTGAATCTGCTATAGGCCGTGTTGCACCTGTTGATTCGGGATTGTGGTGGATTATATTGCTGAGAGCTTATGGGAAGTTAACGGGTGACTATGCATTGCAAGAGAGAGTGGATGTCCAGACGGGCATAAGACTGATCCTTAAGTTGTGTCTAACCGATGGATTTGACATGTTTCCTTCTCTACTAGTCACTGATGGTTCCTGCATGATTGATAGAAGGATGGGCATTCATGGTCACCCTCTTGAGATCCAAGCATTATTTTACTCTGCTTTACGCTGCTCTCGTGAGATGCTGATAGTCAATGACACAACTAGTAATATGGCGGCTGCCATTAGTAATCGCCTGAGTGCTCTCTCATTTCACATGAGAGAGTACTATTGGGTTGANATGAAGAAGATTAATGAAATTTATCGCTATAAGACGGAAGAGTATTCTACTGATGCTGTCAACAAGTTTAACATCTATCCAGAGCAAATTCCTTCATGGCTTGTGGACTGGATCTCTGAGGAAGGTGGATACTTCATTGGCAATTTGCAACCTGCTCACATGGACTTTAGGTTCTTCACACTTGGAAACCTCTGGACCATTGTCTCTTCTTTAGGGACAACAAGACAGAACAGGGGCATTTTGAATTTAATAGAGGCCAAATGGGATGATATCATTGGTCAAATGCCTCTCAAGATATGTTATCCGGCGCTGGAGGGTGAGGAATGGCGTATAATCACTGGCTGTGACCCCAAGAACACCCCTTGGTCATATCACAATGGTGGATCTTGGCCGACACTTCTCTGGCAGTTCACTTTAGCCTGCATCAAGATGGGAAGGCCTGATTTGGCACAGAAGGCTGTTGATGTNGCAGAGAAAAGGCTTTCTGTGGATAGATGGCCGGAGTATTACGATACCCGGAATGGAAAGTTCATCGGCAAGCAGTCCCGGTTGATGCAGACATGGACCATTGCCGGTTTCCTCACCTCAAAGATGCTTCTGGAGAATCCAGAGAAGGNATCCTTGTTGTTTTGGGAGGAGGACTNTGAGCTTCTTCAGAACTGTGTCTGNATGCTAAACAAAACTGGTAGAAGGAAGTGTTCCCGTTTTGCTGCAAGATCTAATAAACCTTATTAATAATAATGAGAAGAATCTCATCTCCCTATGCTGTCTTCTGCTTCAGTCTCTGGCTAGTGGCATAGTTGAAACTGTGTAGGGGAGGAATAGAGATTGTCTGAAACTTTGAAGGTCGCACCTCATTTAATACAATATAGTTGATTGATGATGGATGCCACTTTTCAGAAGTAATGTGTGAACTGAACTGGTTGTCATATTCAGTGGCAAGTGGCAACGGCTTACTGTATAACATNACATTGTTCTGTAGCATCATTGATTATGTGGGGGTAACTCACTCCACGTATATGCCTATTCCCCTGGTTGTTTTNTACTTTAGCTGCACGTACCATGTGACTTCACTGTGTATCAGATTTGAACAGTAGTCACATTAACTCTTTTATATAGATTATTTTTTGTCGGATTTATATAGATTATTATTATTATTATTATTATTATTATTATTTCGTTTAGTGTTTTTATTTATTTATTTATTTATTTATTTCAATTAGAAGTAATGTTTACCTGCATCTGCATGCCCTTGGGTAATCGACTAGTGGGGAAGGGTTCAGATAATTTATGGAAATGTAAATTTTTGTCATTTTTTNGTTGCCAAGGATTCAGAATTGAACTCTCATCATTCTTTTCACTGTTGTAACNAAAAAAACTCTCATNTCTCCAATGGATTTGAAGTTTCATTGCCATGAATCACTATTAAAANTTTTGCTTGATAGGCAAATTTTTTAATAGTGAGATCTCCAGGTGTCCATGGACCAATTGAGTGTAATTGCAACTGAGT

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold01694	6761	11326	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH100

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003824 catalytic activity

GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001694s00031559.1	PF12899.2	Glyco_hydro_100	196	638	3.90E-215

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	13.313
SRR1783600	control	13.350
SRR1783602	moderate drought stress	10.536
SRR1811619	moderate drought stress	10.243

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	44.467
DRR006520	Root Summer glycyrrhizin high producing strain	44.041
DRR006521	Root Winter glycyrrhizin high producing strain	6.888
DRR006522	Root Winter glycyrrhizin high producing strain	6.532
DRR006523	Root Summer glycyrrhizin low producing strain	24.619
DRR006524	Root Summer glycyrrhizin low producing strain	24.510
DRR006525	Leaf Summer glycyrrhizin high producing strain	30.758
DRR006526	Leaf Summer glycyrrhizin high producing strain	30.383

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	32.392
SRR2868004	Drought Stress(Tissue:root)	39.951
SRR2967015	Control (Tissue:root)	45.988

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	169.516
SRR9715740	Leave	117.382
SRR9715741	Leave	174.334
SRR9715739	Root	37.468
SRR9715742	Root	110.152
SRR9715743	Root	92.695

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	29.842
SRR8749028	MeJA induced 9h	42.634
SRR8749029	MeJA induced 9h	33.338
SRR8749030	Uninduced	59.138
SRR8749031	Uninduced	79.107
SRR8749032	Uninduced	63.621

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	34.064
SRR8400027	Control-Root	28.126