Gene detail information of Glyur001697s00030389.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G12780.16.00E-43phosphoglycerate kinase 1
NRXP_004516663.10PREDICTED: phosphoglycerate kinase, chloroplastic-like isoform X1 [Cicer arietinum]
COGYP_007166894.17.00E-45phosphoglycerate kinase [Halothece sp. PCC 7418]
Swissprottr|P29409|PGKH_SPIOL5.00E-49Phosphoglycerate kinase, chloroplastic (Precursor; Fragment)
trEMBLtr|A0A072U6K3|A0A072U6K3_MEDTR0Phosphoglycerate kinase {ECO:0000256|RuleBase:RU000532}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold0169731618478-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00927PGK, pgk EC:2.7.2.3 Carbon metabolism map01200
Biosynthesis of amino acidsmap01230
Glycolysis / Gluconeogenesismap00010
Carbon fixation in photosynthetic organismsmap00710


Gene Ontology

biological_process

GO:0006096  glycolytic process


molecular_function

GO:0004618  phosphoglycerate kinase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001697s00030389.1PF00162.14PGK964267.10E-54


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control2.295
SRR1783600control2.337
SRR1783602moderate drought stress4.005
SRR1811619moderate drought stress4.031

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain2.359
DRR006520Root Summer glycyrrhizin high producing strain2.312
DRR006521Root Winter glycyrrhizin high producing strain1.928
DRR006522Root Winter glycyrrhizin high producing strain1.849
DRR006523Root Summer glycyrrhizin low producing strain2.697
DRR006524Root Summer glycyrrhizin low producing strain2.583
DRR006525Leaf Summer glycyrrhizin high producing strain2.879
DRR006526Leaf Summer glycyrrhizin high producing strain2.679

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)5.125
SRR2868004Drought Stress(Tissue:root)4.949
SRR2967015Control (Tissue:root)4.273

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave4.026
SRR9715740Leave4.771
SRR9715741Leave3.866
SRR9715739Root1.006
SRR9715742Root2.474
SRR9715743Root2.461

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h1.662
SRR8749028MeJA induced 9h3.370
SRR8749029MeJA induced 9h1.312
SRR8749030Uninduced1.334
SRR8749031Uninduced0.668
SRR8749032Uninduced0.611

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root7.283
SRR8400027Control-Root7.507

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved