Gene detail information of Glyur001697s00030396.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G02580.14.00E-124sterol 1
NRXP_004489538.10PREDICTED: delta(7)-sterol-C5(6)-desaturase-like [Cicer arietinum]
COGYP_007060852.19.00E-14sterol desaturase [Synechococcus sp. PCC 6312]
Swissprottr|Q9ZT29|SC5D_TOBAC4.00E-160Delta(7)-sterol-C5(6)-desaturase
trEMBLtr|I3S5C2|I3S5C2_LOTJA1.00E-175Uncharacterized protein {ECO:0000313|EMBL:AFK35464.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold016974631650808+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00227SC5DL, ERG3 EC:1.14.19.20 Steroid biosynthesis map00100


Gene Ontology

biological_process

GO:0006633  fatty acid biosynthetic process

GO:0055114  oxidation-reduction process


molecular_function

GO:0005506  iron ion binding

GO:0016491  oxidoreductase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001697s00030396.1PF04116.8FA_hydroxylase1362463.20E-12


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control31.476
SRR1783600control31.866
SRR1783602moderate drought stress24.899
SRR1811619moderate drought stress25.291

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain47.363
DRR006520Root Summer glycyrrhizin high producing strain48.023
DRR006521Root Winter glycyrrhizin high producing strain17.546
DRR006522Root Winter glycyrrhizin high producing strain17.400
DRR006523Root Summer glycyrrhizin low producing strain63.020
DRR006524Root Summer glycyrrhizin low producing strain61.369
DRR006525Leaf Summer glycyrrhizin high producing strain59.453
DRR006526Leaf Summer glycyrrhizin high producing strain60.577

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)54.003
SRR2868004Drought Stress(Tissue:root)40.424
SRR2967015Control (Tissue:root)40.759

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave41.004
SRR9715740Leave49.792
SRR9715741Leave37.892
SRR9715739Root31.211
SRR9715742Root25.371
SRR9715743Root25.304

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h44.924
SRR8749028MeJA induced 9h39.353
SRR8749029MeJA induced 9h29.793
SRR8749030Uninduced19.397
SRR8749031Uninduced8.198
SRR8749032Uninduced8.817

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root29.301
SRR8400027Control-Root29.891

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved