Gene detail information of Glyur001699s00041008.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G30400.1 | 1.00E-23 | ovate family protein 2 |
| NR | AFK39924.1 | 1.82E-100 | unknown [Medicago truncatula] |
| Swissprot | tr|O04351|OFP2_ARATH | 1.00E-38 | Transcription repressor OFP2 |
| trEMBL | tr|I3SI32|I3SI32_MEDTR | 7.00E-101 | Uncharacterized protein {ECO:0000313|EMBL:AFK39924.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01699 | 45056 | 46345 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | OFP |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001699s00041008.1 | PF13724.1 | DNA_binding_2 | 1 | 48 | 5.50E-19 |
| Glyur001699s00041008.1 | PF04844.8 | Ovate | 294 | 352 | 3.40E-26 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 13.965 |
| SRR1783600 | control | 13.386 |
| SRR1783602 | moderate drought stress | 10.772 |
| SRR1811619 | moderate drought stress | 11.011 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.491 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.979 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.468 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.303 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 16.357 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 16.337 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 14.056 |
| SRR2868004 | Drought Stress(Tissue:root) | 9.009 |
| SRR2967015 | Control (Tissue:root) | 7.919 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.917 |
| SRR9715740 | Leave | 2.975 |
| SRR9715741 | Leave | 0.638 |
| SRR9715739 | Root | 1.171 |
| SRR9715742 | Root | 5.271 |
| SRR9715743 | Root | 5.328 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.444 |
| SRR8749028 | MeJA induced 9h | 14.253 |
| SRR8749029 | MeJA induced 9h | 2.602 |
| SRR8749030 | Uninduced | 10.012 |
| SRR8749031 | Uninduced | 19.105 |
| SRR8749032 | Uninduced | 14.901 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 49.476 |
| SRR8400027 | Control-Root | 55.012 |