Gene detail information of Glyur001699s00041011.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G01830.14.00E-179ARM repeat superfamily protein
NRXP_004506434.10PREDICTED: U-box domain-containing protein 16-like [Cicer arietinum]
COGYP_001958455.14.00E-12hypothetical protein Aasi_1435 [Candidatus Amoebophilus asiaticus 5a2]
Swissprottr|Q9LZW3|PUB16_ARATH0U-box domain-containing protein 16
trEMBLtr|A0A072UHQ2|A0A072UHQ2_MEDTR0Plant U-box protein {ECO:0000313|EMBL:KEH29207.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold016995114453330-


Gene family

Gene familysubfamily
Ubiquitin FamilyU_box


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0016567  protein ubiquitination


molecular_function

GO:0004842  ubiquitin-protein transferase activity

GO:0005488  binding

GO:0005515  protein binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001699s00041011.1PF04564.10U-box3013714.60E-20
Glyur001699s00041011.1PF00514.18Arm4434857.10E-07


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control5.260
SRR1783600control5.493
SRR1783602moderate drought stress7.363
SRR1811619moderate drought stress7.323

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain20.760
DRR006520Root Summer glycyrrhizin high producing strain20.990
DRR006521Root Winter glycyrrhizin high producing strain24.731
DRR006522Root Winter glycyrrhizin high producing strain24.188
DRR006523Root Summer glycyrrhizin low producing strain43.964
DRR006524Root Summer glycyrrhizin low producing strain43.600
DRR006525Leaf Summer glycyrrhizin high producing strain6.923
DRR006526Leaf Summer glycyrrhizin high producing strain6.950

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)45.505
SRR2868004Drought Stress(Tissue:root)81.080
SRR2967015Control (Tissue:root)88.321

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave8.867
SRR9715740Leave4.701
SRR9715741Leave16.030
SRR9715739Root39.679
SRR9715742Root55.577
SRR9715743Root47.473

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h126.927
SRR8749028MeJA induced 9h199.174
SRR8749029MeJA induced 9h133.080
SRR8749030Uninduced129.669
SRR8749031Uninduced160.465
SRR8749032Uninduced200.549

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root25.081
SRR8400027Control-Root20.618

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved