Gene detail information of Glyur001700s00031781.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G19810.11.00E-98Glycosyl hydrolase family protein with chitinase insertion domain
NRAFK36566.11.24E-162unknown [Lotus japonicus]
COGYP_007146068.12.00E-37chitinase [Cylindrospermum stagnale PCC 7417]
trEMBLtr|I3S8H4|I3S8H4_LOTJA5.00E-163Uncharacterized protein {ECO:0000313|EMBL:AFK36566.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold0170030024400-


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGH18


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01183E3.2.1.14 EC:3.2.1.14 Amino sugar and nucleotide sugar metabolism map00520


Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process

GO:0006032  chitin catabolic process


molecular_function

GO:0004553  hydrolase activity, hydrolyzing O-glycosyl compounds

GO:0004568  chitinase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001700s00031781.1PF00704.23Glyco_hydro_18393697.90E-86


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control34.470
SRR1783600control34.606
SRR1783602moderate drought stress35.688
SRR1811619moderate drought stress35.477

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.000
DRR006520Root Summer glycyrrhizin high producing strain0.000
DRR006521Root Winter glycyrrhizin high producing strain0.423
DRR006522Root Winter glycyrrhizin high producing strain0.246
DRR006523Root Summer glycyrrhizin low producing strain0.082
DRR006524Root Summer glycyrrhizin low producing strain0.083
DRR006525Leaf Summer glycyrrhizin high producing strain10.908
DRR006526Leaf Summer glycyrrhizin high producing strain10.234

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)26.621
SRR2868004Drought Stress(Tissue:root)35.874
SRR2967015Control (Tissue:root)11.723

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave38.193
SRR9715740Leave38.805
SRR9715741Leave40.274
SRR9715739Root91.075
SRR9715742Root78.186
SRR9715743Root79.132

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.776
SRR8749028MeJA induced 9h10.041
SRR8749029MeJA induced 9h1.848
SRR8749030Uninduced9.103
SRR8749031Uninduced5.703
SRR8749032Uninduced9.805

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root284.237
SRR8400027Control-Root213.833

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved