Gene detail information of Glyur001700s00031785.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G25180.1 | 3.00E-90 | response regulator 12 |
| NR | XP_004507711.1 | 0 | PREDICTED: two-component response regulator ARR12-like isoform X1 [Cicer arietinum] |
| COG | YP_004369402.1 | 3.00E-17 | two component, sigma54 specific, transcriptional regulator, Fis family [Desulfobacca acetoxidans DSM 11109] |
| Swissprot | tr|P62598|ARR12_ARATH | 5.00E-106 | Two-component response regulator ARR12 |
| trEMBL | tr|K7MKF2|K7MKF2_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G08380.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01700 | 30884 | 33745 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | ARR-B |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001700s00031785.1 | PF00072.19 | Response_reg | 24 | 132 | 1.80E-22 |
| Glyur001700s00031785.1 | PF00249.26 | Myb_DNA-binding | 212 | 262 | 1.20E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.300 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.294 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.035 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.028 |
| SRR2967015 | Control (Tissue:root) | 0.117 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.002 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.126 |
| SRR8749029 | MeJA induced 9h | 0.106 |
| SRR8749030 | Uninduced | 0.097 |
| SRR8749031 | Uninduced | 0.089 |
| SRR8749032 | Uninduced | 0.419 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.049 |
| SRR8400027 | Control-Root | 0.059 |