Gene detail information of Glyur001710s00038180.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| NR | XP_004514373.1 | 2.51E-33 | PREDICTED: F-box protein CPR30-like [Cicer arietinum] |
| Swissprot | tr|Q84X43|FBX8_ARATH | 2.00E-08 | F-box only protein 8 |
| trEMBL | tr|A0A072V761|A0A072V761_MEDTR | 4.00E-31 | F-box protein interaction domain protein {ECO:0000313|EMBL:KEH37466.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01710 | 36481 | 37288 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.464 |
| SRR1783600 | control | 0.306 |
| SRR1783602 | moderate drought stress | 0.204 |
| SRR1811619 | moderate drought stress | 0.147 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.176 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.054 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.112 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.203 |
| SRR2967015 | Control (Tissue:root) | 0.243 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.179 |
| SRR9715742 | Root | 0.005 |
| SRR9715743 | Root | 0.086 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.173 |
| SRR8749028 | MeJA induced 9h | 0.285 |
| SRR8749029 | MeJA induced 9h | 0.381 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.169 |
| SRR8749032 | Uninduced | 0.210 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.258 |
| SRR8400027 | Control-Root | 0.299 |