Gene detail

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Gene detail information of Glyur001718s00031997.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G06060.1	7.00E-68	NAD(P)-binding Rossmann-fold superfamily protein
NR	KEH22973.1	6.42E-121	NAD(P)-binding rossmann-fold protein [Medicago truncatula]
COG	YP_001864184.1	1.00E-49	tropinone reductase [Nostoc punctiforme PCC 73102]
Swissprot	tr\|P50165\|TRNH_DATST	4.00E-82	Tropinone reductase homolog
trEMBL	tr\|A0A072U1F3\|A0A072U1F3_MEDTR	2.00E-121	NAD(P)-binding rossmann-fold protein {ECO:0000313\|EMBL:KEH22973.1}

Sequence

Transcript Sequence

>Glyur001718s00031997.1
CTACCGGCTAGGTTAGATAGCCGGAAATATGGCTGCAGAAGCAAAGTTGAGTTTCAAAGACGAAAGATGGTCACTCCATGGAATGACAGCTCTAGTCACCGGCACGCAATTGTGGAAGAGTTAGCAGAATTTGGGGCAGCTGTGCATATATGTGCACGTAATCAACAAGATATTGATAAATGTTTGGAAGAGTGGAAGAACAAAGGATTTAGTGTGACAGGGTCGGCGTGTGATTTATCATCTCATGACCAACGTGAGAAGTTAATGGAAACTGTTGCTTCAGTGAACAATGCTGCGAGAGTTGTAGGGAAGAAAATAATAGACCACACTGCAGAGGATATATCAACCATAATGAGTACCAATTTCGAGTCCGGTTATCATTTGTGTCAACTTGCACACCCACTTCTAAAACAATCTGGATACGGAAGCGTGGTATTTACTTCCTCCATTGCAGGTCTAAAAGCTATTCCCGCTTTATCTGCTTATGCAGCCACTAAAGGAGCCATAAATCAATTCACCAAGAACTTAGCTTTGGAATGGGCAGAGGATAATATCCGTGCAAATGCTGTGGCACCTGGACCTGTTATGACTACACTTTTGGAGTCTTTAATGGAATCTTCTGAAGGGGATAGAGCTATAAATGATGTAGTGTCTCAAACCCCTATTGGTCGTAAAGGAGAGCCTAAAGAGATATCAGCACTAGTTGCTTTTCTGTGCCTTCCGGCTGCATCATATATCACTGGACAGGTCGGAAGCTTTAACGAGAGTGTCGAGGTTCTTGATGTTCTTGATGTTCATGTGATGGAACTCGATGCGGTGGGCCCAGGGGAGGGACTTATCGAGGAGGTGGTTGATTTTGTCGGAGGAGACGTCGACGACGATGGCCTTGTGGGAGGTTTCAGCCATCAGCTTCGCGCAGAGGAGGTGGTTGAAAGTGTTATACAACACACTTGTGGGTGGTCGCTGTTCGCGTCTCAGAGGGAGGCCGGGAGGGAGCTTCACAATGCTTCGTGACTGTGGGTGGCCGCCGTTAGGGAGCTTGTCGGCGGAGCTTGGGTCCTTAGGGTTACTAATTGAGGGAAGAGGGAAGAGGGTCACACGGTCTGAGTCATACATAAGTCGCAGTCGCAGCAAAATATGACTCATGGTAGCTACGGTGGGGACGCGATGCACTATATAGAAACTCTAGCGGTTCGGTTCAGTTCGGTTCGGTTCTGTCCAAGTCAACCGCAAACCGAACCGAACCGCGCG

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold01718	44405	53504	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K08081	TR1	EC:1.1.1.206	Tropane, piperidine and pyridine alkaloid biosynthesis	map00960

Gene Ontology

molecular_function
GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001718s00031997.1	PF13561.1	adh_short_C2	35	250	2.00E-24

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.507
SRR1783600	control	7.525
SRR1783602	moderate drought stress	0.091
SRR1811619	moderate drought stress	0.119

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.396
DRR006520	Root Summer glycyrrhizin high producing strain	3.953
DRR006521	Root Winter glycyrrhizin high producing strain	4.721
DRR006522	Root Winter glycyrrhizin high producing strain	3.868
DRR006523	Root Summer glycyrrhizin low producing strain	0.017
DRR006524	Root Summer glycyrrhizin low producing strain	0.103
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.312
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.338

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.626
SRR2868004	Drought Stress(Tissue:root)	0.906
SRR2967015	Control (Tissue:root)	0.807

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	5.189
SRR9715740	Leave	0.132
SRR9715741	Leave	2.136
SRR9715739	Root	0.020
SRR9715742	Root	0.919
SRR9715743	Root	0.819

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.028

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	3.825
SRR8400027	Control-Root	6.570