Gene detail information of Glyur001724s00040325.2 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G31610.1 | 4.00E-24 | Ribosomal protein S3 family protein |
| NR | XP_004501017.1 | 1.93E-29 | PREDICTED: 40S ribosomal protein S3-1-like [Cicer arietinum] |
| COG | YP_004407069.1 | 3.00E-07 | serine/threonine protein kinase with pasta sensor(s) [Verrucosispora maris AB-18-032] |
| Swissprot | tr|Q9SIP7|RS31_ARATH | 2.00E-28 | 40S ribosomal protein S3-1 |
| trEMBL | tr|A0A067CYT4|A0A067CYT4_CITSI | 9.00E-30 | Uncharacterized protein {ECO:0000313|EMBL:KDO35864.1} (Fragment) |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01724 | 39 | 6991 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | PPC:1.6.3 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001724s00040325.2 | PF07714.12 | Pkinase_Tyr | 10 | 81 | 3.30E-08 |
| Glyur001724s00040325.2 | PF03813.9 | Nrap | 62 | 138 | 8.30E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.176 |
| SRR1783600 | control | 0.188 |
| SRR1783602 | moderate drought stress | 0.148 |
| SRR1811619 | moderate drought stress | 0.211 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.409 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.425 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.490 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.542 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.076 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.242 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.245 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.244 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 1.190 |
| SRR2868004 | Drought Stress(Tissue:root) | 1.065 |
| SRR2967015 | Control (Tissue:root) | 0.528 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.215 |
| SRR9715740 | Leave | 0.147 |
| SRR9715741 | Leave | 0.206 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.171 |
| SRR8749028 | MeJA induced 9h | 0.401 |
| SRR8749029 | MeJA induced 9h | 0.136 |
| SRR8749030 | Uninduced | 0.121 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.766 |
| SRR8400027 | Control-Root | 1.084 |