Gene detail information of Glyur001726s00035057.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G13250.1 | 1.00E-128 | galacturonosyltransferase-like 3 |
| NR | XP_004502731.1 | 0 | PREDICTED: probable galacturonosyltransferase-like 3-like isoform X1 [Cicer arietinum] |
| COG | YP_004895459.1 | 5.00E-11 | general stress protein A [Acidaminococcus intestini RyC-MR95] |
| Swissprot | tr|Q0V7R1|GATL3_ARATH | 7.00E-165 | Probable galacturonosyltransferase-like 3 |
| trEMBL | tr|G7J889|G7J889_MEDTR | 0 | CAZy family GT8 glycosyltransferase {ECO:0000313|EMBL:AES72587.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01726 | 49707 | 51073 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT8 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001726s00035057.1 | PF01501.15 | Glyco_transf_8 | 56 | 314 | 1.70E-54 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 34.133 |
| SRR1783600 | control | 33.969 |
| SRR1783602 | moderate drought stress | 27.465 |
| SRR1811619 | moderate drought stress | 26.744 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 14.953 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 14.828 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.108 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.158 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 12.083 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 13.028 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.862 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.024 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 8.069 |
| SRR2868004 | Drought Stress(Tissue:root) | 5.500 |
| SRR2967015 | Control (Tissue:root) | 6.084 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 5.464 |
| SRR9715740 | Leave | 2.062 |
| SRR9715741 | Leave | 2.404 |
| SRR9715739 | Root | 36.036 |
| SRR9715742 | Root | 22.263 |
| SRR9715743 | Root | 23.154 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 26.731 |
| SRR8749028 | MeJA induced 9h | 14.734 |
| SRR8749029 | MeJA induced 9h | 18.948 |
| SRR8749030 | Uninduced | 3.225 |
| SRR8749031 | Uninduced | 0.974 |
| SRR8749032 | Uninduced | 5.084 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 16.974 |
| SRR8400027 | Control-Root | 21.513 |