Gene detail information of Glyur001732s00023320.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G31510.10IBR domain-containing protein
NRXP_007150419.10hypothetical protein PHAVU_005G152000g [Phaseolus vulgaris]
Swissprottr|Q84RR0|ARI7_ARATH0Probable E3 ubiquitin-protein ligase ARI7
trEMBLtr|V7BZ86|V7BZ86_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW22413.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold017321489620840+


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001732s00023320.2PF01485.16IBR2062681.20E-15
Glyur001732s00023320.2PF01485.16IBR2873324.80E-10


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control22.928
SRR1783600control23.139
SRR1783602moderate drought stress25.002
SRR1811619moderate drought stress24.816

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain34.555
DRR006520Root Summer glycyrrhizin high producing strain34.166
DRR006521Root Winter glycyrrhizin high producing strain32.320
DRR006522Root Winter glycyrrhizin high producing strain31.530
DRR006523Root Summer glycyrrhizin low producing strain28.573
DRR006524Root Summer glycyrrhizin low producing strain28.190
DRR006525Leaf Summer glycyrrhizin high producing strain26.635
DRR006526Leaf Summer glycyrrhizin high producing strain26.297

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)44.399
SRR2868004Drought Stress(Tissue:root)50.807
SRR2967015Control (Tissue:root)48.271

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave30.523
SRR9715740Leave31.713
SRR9715741Leave42.410
SRR9715739Root11.693
SRR9715742Root32.374
SRR9715743Root30.713

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h59.563
SRR8749028MeJA induced 9h44.306
SRR8749029MeJA induced 9h46.367
SRR8749030Uninduced29.363
SRR8749031Uninduced20.812
SRR8749032Uninduced21.456

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root52.201
SRR8400027Control-Root46.233

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved