Gene detail information of Glyur001732s00023324.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G31450.24.00E-104DNA glycosylase superfamily protein
NRKEH30313.10EndoIII-related endonuclease [Medicago truncatula]
COGYP_004151796.11.00E-47DNA-(apurinic or apyrimidinic site) lyase [Thermovibrio ammonificans HB-1]
Swissprottr|Q9SIC4|NTH1_ARATH9.00E-135Endonuclease III homolog 1, chloroplastic {ECO:0000255|HAMAP-Rule:MF_03183} (Precursor)
trEMBLtr|A0A072UMM8|A0A072UMM8_MEDTR0EndoIII-related endonuclease {ECO:0000313|EMBL:KEH30313.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold017323064134563-


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K10773NTH EC:4.2.99.18 Base excision repair map03410


Gene Ontology

biological_process

GO:0006281  DNA repair

GO:0006284  base-excision repair

GO:0006285  base-excision repair, AP site formation


cellular_component

GO:0005634  nucleus


molecular_function

GO:0003677  DNA binding

GO:0003824  catalytic activity

GO:0003906  DNA-(apurinic or apyrimidinic site) lyase activity

GO:0019104  DNA N-glycosylase activity

GO:0051539  4 iron, 4 sulfur cluster binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001732s00023324.1PF00730.20HhH-GPD1763181.40E-20
Glyur001732s00023324.1PF00633.18HHH2422704.80E-09


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control4.127
SRR1783600control4.046
SRR1783602moderate drought stress4.024
SRR1811619moderate drought stress4.103

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain4.194
DRR006520Root Summer glycyrrhizin high producing strain4.154
DRR006521Root Winter glycyrrhizin high producing strain1.994
DRR006522Root Winter glycyrrhizin high producing strain1.987
DRR006523Root Summer glycyrrhizin low producing strain5.356
DRR006524Root Summer glycyrrhizin low producing strain5.894
DRR006525Leaf Summer glycyrrhizin high producing strain0.580
DRR006526Leaf Summer glycyrrhizin high producing strain0.477

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)4.631
SRR2868004Drought Stress(Tissue:root)4.378
SRR2967015Control (Tissue:root)4.203

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave1.112
SRR9715740Leave0.651
SRR9715741Leave0.720
SRR9715739Root2.007
SRR9715742Root1.732
SRR9715743Root1.328

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h6.163
SRR8749028MeJA induced 9h2.767
SRR8749029MeJA induced 9h4.033
SRR8749030Uninduced0.952
SRR8749031Uninduced1.017
SRR8749032Uninduced0.818

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root3.978
SRR8400027Control-Root4.349

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved