Gene detail information of Glyur001733s00027628.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G78950.10Terpenoid cyclases family protein
NRADE88148.10beta-amyrin synthase [Glycyrrhiza uralensis]
COGYP_004916060.13.00E-154(S)-2,3-epoxysqualene cyclase [Methylomicrobium alcaliphilum 20Z]
Swissprottr|Q9MB42|BAMS_GLYGL0Beta-amyrin synthase
trEMBLtr|D7P7W7|D7P7W7_GLYUR0Beta-amyrin synthase {ECO:0000313|EMBL:ADE88148.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold017333649344214-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K15813LUP4 EC:5.4.99.39 Sesquiterpenoid and triterpenoid biosynthesis map00909


Gene Ontology

molecular_function

GO:0003824  catalytic activity

GO:0016866  intramolecular transferase activity



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001733s00027628.1PF00432.16Prenyltrans1311731.80E-08
Glyur001733s00027628.1PF13243.1Prenyltrans_15696385.90E-12


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control157.314
SRR1783600control159.917
SRR1783602moderate drought stress48.755
SRR1811619moderate drought stress48.359

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain74.270
DRR006520Root Summer glycyrrhizin high producing strain73.958
DRR006521Root Winter glycyrrhizin high producing strain0.274
DRR006522Root Winter glycyrrhizin high producing strain0.267
DRR006523Root Summer glycyrrhizin low producing strain4.969
DRR006524Root Summer glycyrrhizin low producing strain5.076
DRR006525Leaf Summer glycyrrhizin high producing strain1.045
DRR006526Leaf Summer glycyrrhizin high producing strain1.139

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)667.065
SRR2868004Drought Stress(Tissue:root)272.719
SRR2967015Control (Tissue:root)262.618

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave14.700
SRR9715740Leave1.375
SRR9715741Leave3.390
SRR9715739Root55.943
SRR9715742Root275.229
SRR9715743Root226.048

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.391
SRR8749028MeJA induced 9h0.787
SRR8749029MeJA induced 9h0.609
SRR8749030Uninduced0.377
SRR8749031Uninduced0.887
SRR8749032Uninduced1.118

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root383.650
SRR8400027Control-Root352.984

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved