Gene detail information of Glyur001734s00030842.2 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G46130.1 | 4.00E-61 | myb domain protein 48 |
| NR | XP_003606618.1 | 4.98E-109 | MYB transcription factor [Medicago truncatula] |
| Swissprot | tr|Q9LX82|MYB48_ARATH | 5.00E-77 | Transcription factor MYB48 |
| trEMBL | tr|G7JTP3|G7JTP3_MEDTR | 2.00E-109 | Myb transcription factor {ECO:0000313|EMBL:AES88815.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01734 | 416 | 1618 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | MYB |
| EAR motif-containing Proteins | MYB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001734s00030842.2 | PF00249.26 | Myb_DNA-binding | 9 | 56 | 2.00E-12 |
| Glyur001734s00030842.2 | PF00249.26 | Myb_DNA-binding | 62 | 107 | 2.80E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 38.180 |
| SRR1783600 | control | 39.265 |
| SRR1783602 | moderate drought stress | 86.724 |
| SRR1811619 | moderate drought stress | 86.144 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 16.916 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 17.184 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 15.586 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 18.284 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 18.553 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 20.184 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.110 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.783 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 52.258 |
| SRR2868004 | Drought Stress(Tissue:root) | 85.499 |
| SRR2967015 | Control (Tissue:root) | 84.463 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 5.866 |
| SRR9715740 | Leave | 19.442 |
| SRR9715741 | Leave | 28.813 |
| SRR9715739 | Root | 4.683 |
| SRR9715742 | Root | 10.644 |
| SRR9715743 | Root | 9.955 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.382 |
| SRR8749028 | MeJA induced 9h | 5.193 |
| SRR8749029 | MeJA induced 9h | 1.119 |
| SRR8749030 | Uninduced | 0.115 |
| SRR8749031 | Uninduced | 0.022 |
| SRR8749032 | Uninduced | 0.057 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 78.440 |
| SRR8400027 | Control-Root | 35.196 |