Gene detail information of Glyur001734s00030846.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G28690.1 | 1.00E-33 | Protein of unknown function (DUF1635) |
| NR | XP_003606612.1 | 4.32E-150 | hypothetical protein MTR_4g063070 [Medicago truncatula] |
| Swissprot | tr|Q8L9T5|ATL2_ARATH | 2.00E-20 | RING-H2 finger protein ATL2 |
| trEMBL | tr|G7JTP0|G7JTP0_MEDTR | 2.00E-150 | Zinc finger, C3HC4 type (RING finger) protein {ECO:0000313|EMBL:AES88809.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01734 | 21105 | 24231 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001734s00030846.1 | PF07795.6 | DUF1635 | 15 | 239 | 1.10E-28 |
| Glyur001734s00030846.1 | PF13639.1 | zf-RING_2 | 370 | 413 | 2.70E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.592 |
| SRR1783600 | control | 1.669 |
| SRR1783602 | moderate drought stress | 0.867 |
| SRR1811619 | moderate drought stress | 0.938 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.525 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.488 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 9.471 |
| SRR2868004 | Drought Stress(Tissue:root) | 5.089 |
| SRR2967015 | Control (Tissue:root) | 2.741 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 1.315 |
| SRR9715740 | Leave | 0.941 |
| SRR9715741 | Leave | 1.942 |
| SRR9715739 | Root | 0.113 |
| SRR9715742 | Root | 0.034 |
| SRR9715743 | Root | 0.214 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 17.483 |
| SRR8749028 | MeJA induced 9h | 6.907 |
| SRR8749029 | MeJA induced 9h | 7.065 |
| SRR8749030 | Uninduced | 0.670 |
| SRR8749031 | Uninduced | 0.301 |
| SRR8749032 | Uninduced | 0.356 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 5.928 |
| SRR8400027 | Control-Root | 2.196 |