Gene detail information of Glyur001738s00030226.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G35910.10Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain
NRXP_003551099.10PREDICTED: exosome component 10-like isoform X1 [Glycine max]
COGYP_903266.12.00E-273'-5' exonuclease [Pelobacter propionicus DSM 2379]
trEMBLtr|I1MW66|I1MW66_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G24130.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold01738866718049-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K12591RRP6, EXOSC10 EC:3.1.13.- RNA degradation map03018


Gene Ontology

biological_process

GO:0006139  nucleobase-containing compound metabolic process

GO:0044237  cellular metabolic process


cellular_component

GO:0005622  intracellular


molecular_function

GO:0000166  nucleotide binding

GO:0003676  nucleic acid binding

GO:0003824  catalytic activity

GO:0008408  3'-5' exonuclease activity

"

Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001738s00030226.1PF01612.15DNA_pol_A_exo12554211.70E-42
Glyur001738s00030226.1PF00570.18HRDC4765431.00E-12


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control21.349
SRR1783600control21.341
SRR1783602moderate drought stress25.437
SRR1811619moderate drought stress24.990

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain27.477
DRR006520Root Summer glycyrrhizin high producing strain27.163
DRR006521Root Winter glycyrrhizin high producing strain22.117
DRR006522Root Winter glycyrrhizin high producing strain21.656
DRR006523Root Summer glycyrrhizin low producing strain26.681
DRR006524Root Summer glycyrrhizin low producing strain26.468
DRR006525Leaf Summer glycyrrhizin high producing strain16.212
DRR006526Leaf Summer glycyrrhizin high producing strain15.590

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)29.891
SRR2868004Drought Stress(Tissue:root)26.501
SRR2967015Control (Tissue:root)29.603

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave15.732
SRR9715740Leave16.863
SRR9715741Leave22.051
SRR9715739Root3.101
SRR9715742Root22.473
SRR9715743Root17.190

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h25.758
SRR8749028MeJA induced 9h30.607
SRR8749029MeJA induced 9h21.237
SRR8749030Uninduced16.284
SRR8749031Uninduced12.068
SRR8749032Uninduced12.796

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root29.939
SRR8400027Control-Root25.773

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved