Gene detail information of Glyur001746s00033972.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G02960.42.00E-71RING/FYVE/PHD zinc finger superfamily protein
NRXP_004490059.11.37E-178PREDICTED: uncharacterized protein LOC101496707 [Cicer arietinum]
Swissprottr|F4JKK0|SUD1_ARATH1.00E-09Probable E3 ubiquitin ligase SUD1
trEMBLtr|V7CJT4|V7CJT4_PHAVU3.00E-153Uncharacterized protein {ECO:0000313|EMBL:ESW29618.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold017463904542802+


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001746s00033972.1PF12906.2RINGv711166.50E-13
Glyur001746s00033972.1PF12428.3DUF36751222428.40E-46


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control71.387
SRR1783600control71.262
SRR1783602moderate drought stress44.504
SRR1811619moderate drought stress43.742

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain84.771
DRR006520Root Summer glycyrrhizin high producing strain84.349
DRR006521Root Winter glycyrrhizin high producing strain60.048
DRR006522Root Winter glycyrrhizin high producing strain57.684
DRR006523Root Summer glycyrrhizin low producing strain99.471
DRR006524Root Summer glycyrrhizin low producing strain101.209
DRR006525Leaf Summer glycyrrhizin high producing strain64.666
DRR006526Leaf Summer glycyrrhizin high producing strain63.853

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)93.950
SRR2868004Drought Stress(Tissue:root)102.702
SRR2967015Control (Tissue:root)97.194

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave247.381
SRR9715740Leave135.679
SRR9715741Leave296.419
SRR9715739Root105.954
SRR9715742Root152.979
SRR9715743Root142.590

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h201.440
SRR8749028MeJA induced 9h130.503
SRR8749029MeJA induced 9h235.079
SRR8749030Uninduced181.941
SRR8749031Uninduced287.960
SRR8749032Uninduced192.737

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root93.904
SRR8400027Control-Root112.415

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved