Gene detail information of Glyur001748s00034946.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G30820.1 | 6.00E-06 | CTP synthase family protein |
| NR | XP_008447057.1 | 1.24E-06 | PREDICTED: CTP synthase [Cucumis melo] |
| trEMBL | tr|K4C4A7|K4C4A7_SOLLC | 4.00E-07 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc06g016800.1.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01748 | 445 | 1042 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01937 | pyrG, CTPS | EC:6.3.4.2 | Pyrimidine metabolism | map00240 |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.560 |
| SRR1783600 | control | 2.348 |
| SRR1783602 | moderate drought stress | 6.321 |
| SRR1811619 | moderate drought stress | 6.237 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.461 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.925 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.132 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.277 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.452 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.212 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.167 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.078 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 4.386 |
| SRR2868004 | Drought Stress(Tissue:root) | 4.509 |
| SRR2967015 | Control (Tissue:root) | 3.554 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 1.385 |
| SRR9715740 | Leave | 1.544 |
| SRR9715741 | Leave | 1.806 |
| SRR9715739 | Root | 0.068 |
| SRR9715742 | Root | 1.549 |
| SRR9715743 | Root | 0.902 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.070 |
| SRR8749028 | MeJA induced 9h | 0.792 |
| SRR8749029 | MeJA induced 9h | 2.379 |
| SRR8749030 | Uninduced | 1.537 |
| SRR8749031 | Uninduced | 0.654 |
| SRR8749032 | Uninduced | 1.310 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 7.228 |
| SRR8400027 | Control-Root | 9.164 |