Gene detail information of Glyur001748s00034951.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G09300.16.00E-136Thiamin diphosphate-binding fold (THDP-binding) superfamily protein
NRKEH35384.102-oxoisovalerate dehydrogenase subunit alpha [Medicago truncatula]
COGYP_005885326.13.00E-84branched-chain alpha-keto acid dehydrogenase complex E1 alpha subunit [Marinobacter adhaerens HP15]
Swissprottr|Q84JL2|ODBA2_ARATH2.00E-1662-oxoisovalerate dehydrogenase subunit alpha 2, mitochondrial (Precursor)
trEMBLtr|A0A072V066|A0A072V066_MEDTR02-oxoisovalerate dehydrogenase subunit alpha {ECO:0000313|EMBL:KEH35384.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold017483433643049+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00166BCKDHA, bkdA1 EC:1.2.4.4 Propanoate metabolism map00640
Valine, leucine and isoleucine degradationmap00280


Gene Ontology

biological_process

GO:0008152  metabolic process


molecular_function

GO:0016624  oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001748s00034951.1PF00676.15E1_dh1592081.60E-05
Glyur001748s00034951.1PF00676.15E1_dh2384135.30E-51


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control35.365
SRR1783600control34.841
SRR1783602moderate drought stress33.658
SRR1811619moderate drought stress33.586

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain9.114
DRR006520Root Summer glycyrrhizin high producing strain9.123
DRR006521Root Winter glycyrrhizin high producing strain10.999
DRR006522Root Winter glycyrrhizin high producing strain10.827
DRR006523Root Summer glycyrrhizin low producing strain7.874
DRR006524Root Summer glycyrrhizin low producing strain7.597
DRR006525Leaf Summer glycyrrhizin high producing strain32.565
DRR006526Leaf Summer glycyrrhizin high producing strain32.696

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)10.992
SRR2868004Drought Stress(Tissue:root)37.560
SRR2967015Control (Tissue:root)75.730

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave17.232
SRR9715740Leave7.775
SRR9715741Leave27.383
SRR9715739Root1.862
SRR9715742Root7.729
SRR9715743Root7.010

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h7.103
SRR8749028MeJA induced 9h38.780
SRR8749029MeJA induced 9h11.927
SRR8749030Uninduced189.312
SRR8749031Uninduced321.667
SRR8749032Uninduced199.798

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root15.074
SRR8400027Control-Root16.520

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved