Gene detail information of Glyur001755s00039476.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G26960.1 | 1.00E-102 | Galactose oxidase/kelch repeat superfamily protein |
| NR | XP_004513213.1 | 0 | PREDICTED: F-box/kelch-repeat protein At5g26960-like [Cicer arietinum] |
| COG | YP_006860639.1 | 5.00E-08 | Kelch repeat-containing protein [Candidatus Nitrososphaera gargensis Ga9.2] |
| Swissprot | tr|Q6NPN5|FK113_ARATH | 2.00E-150 | F-box/kelch-repeat protein At5g26960 |
| trEMBL | tr|A0A072UVT8|A0A072UVT8_MEDTR | 0 | F-box/kelch-repeat plant protein {ECO:0000313|EMBL:KEH33526.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01755 | 32032 | 33246 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001755s00039476.1 | PF00646.28 | F-box | 52 | 91 | 7.70E-07 |
| Glyur001755s00039476.1 | PF01344.20 | Kelch_1 | 186 | 224 | 3.60E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.916 |
| SRR1783600 | control | 6.943 |
| SRR1783602 | moderate drought stress | 5.841 |
| SRR1811619 | moderate drought stress | 5.427 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 10.416 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 10.832 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.696 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.442 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 14.068 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 14.538 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.786 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.966 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 12.901 |
| SRR2868004 | Drought Stress(Tissue:root) | 14.566 |
| SRR2967015 | Control (Tissue:root) | 15.496 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 10.207 |
| SRR9715740 | Leave | 4.741 |
| SRR9715741 | Leave | 9.224 |
| SRR9715739 | Root | 7.817 |
| SRR9715742 | Root | 7.032 |
| SRR9715743 | Root | 9.665 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.062 |
| SRR8749028 | MeJA induced 9h | 7.384 |
| SRR8749029 | MeJA induced 9h | 4.726 |
| SRR8749030 | Uninduced | 2.273 |
| SRR8749031 | Uninduced | 2.746 |
| SRR8749032 | Uninduced | 3.737 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 11.761 |
| SRR8400027 | Control-Root | 12.570 |