Gene detail information of Glyur001765s00026140.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G36910.10ATP binding cassette subfamily B1
NRXP_007162774.10hypothetical protein PHAVU_001G179300g [Phaseolus vulgaris]
COGYP_629357.11.00E-113ABC transporter permease [Myxococcus xanthus DK 1622]
Swissprottr|Q9ZR72|AB1B_ARATH0ABC transporter B family member 1
trEMBLtr|V7CZF2|V7CZF2_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW34768.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold01765446311578+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K05658ABCB1, CD243 EC:3.6.3.44 ABC transporters map02010
Bile secretionmap04976
MicroRNAs in cancermap05206


Gene Ontology

biological_process

GO:0006810  transport

GO:0055085  transmembrane transport


cellular_component

GO:0016021  integral component of membrane


molecular_function

GO:0005524  ATP binding

GO:0016887  ATPase activity

GO:0042626  ATPase activity, coupled to transmembrane movement of substances

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001765s00026140.1PF00664.18ABC_membrane1123843.00E-44
Glyur001765s00026140.1PF00005.22ABC_tran4536022.90E-35
Glyur001765s00026140.1PF00664.18ABC_membrane7709349.80E-26
Glyur001765s00026140.1PF00005.22ABC_tran105111993.80E-35


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control17.474
SRR1783600control17.783
SRR1783602moderate drought stress16.930
SRR1811619moderate drought stress16.510

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain17.805
DRR006520Root Summer glycyrrhizin high producing strain17.518
DRR006521Root Winter glycyrrhizin high producing strain10.600
DRR006522Root Winter glycyrrhizin high producing strain10.429
DRR006523Root Summer glycyrrhizin low producing strain16.305
DRR006524Root Summer glycyrrhizin low producing strain16.398
DRR006525Leaf Summer glycyrrhizin high producing strain1.610
DRR006526Leaf Summer glycyrrhizin high producing strain1.622

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)21.647
SRR2868004Drought Stress(Tissue:root)16.190
SRR2967015Control (Tissue:root)15.441

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave2.206
SRR9715740Leave1.155
SRR9715741Leave1.418
SRR9715739Root12.339
SRR9715742Root20.907
SRR9715743Root19.419

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h19.812
SRR8749028MeJA induced 9h30.408
SRR8749029MeJA induced 9h7.447
SRR8749030Uninduced6.115
SRR8749031Uninduced1.627
SRR8749032Uninduced2.083

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root21.124
SRR8400027Control-Root20.760

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved