Gene detail information of Glyur001771s00034929.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G33500.23.00E-37B-box type zinc finger protein with CCT domain
NRXP_003624458.10Zinc finger protein CONSTANS-like protein [Medicago truncatula]
Swissprottr|O22800|COL14_ARATH8.00E-72Zinc finger protein CONSTANS-LIKE 14
trEMBLtr|G7KW76|G7KW76_MEDTR0Zinc finger constans-like protein {ECO:0000313|EMBL:AES80676.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold017715393558449-


Gene family

Gene familysubfamily
Transcription Factors FamilyC2C2-CO-like


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

cellular_component

GO:0005622  intracellular


molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001771s00034929.1PF06203.9CCT3624051.00E-18


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control7.227
SRR1783600control7.118
SRR1783602moderate drought stress16.134
SRR1811619moderate drought stress16.225

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain13.601
DRR006520Root Summer glycyrrhizin high producing strain13.174
DRR006521Root Winter glycyrrhizin high producing strain24.806
DRR006522Root Winter glycyrrhizin high producing strain25.460
DRR006523Root Summer glycyrrhizin low producing strain7.224
DRR006524Root Summer glycyrrhizin low producing strain7.079
DRR006525Leaf Summer glycyrrhizin high producing strain6.758
DRR006526Leaf Summer glycyrrhizin high producing strain6.873

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)12.454
SRR2868004Drought Stress(Tissue:root)8.919
SRR2967015Control (Tissue:root)17.266

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave3.942
SRR9715740Leave3.251
SRR9715741Leave4.432
SRR9715739Root4.719
SRR9715742Root10.445
SRR9715743Root9.201

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h6.747
SRR8749028MeJA induced 9h4.536
SRR8749029MeJA induced 9h6.923
SRR8749030Uninduced3.469
SRR8749031Uninduced2.725
SRR8749032Uninduced6.841

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root14.744
SRR8400027Control-Root11.751

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved