Gene detail information of Glyur001780s00035666.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G29340.10plant U-box 17
NRXP_004485933.10PREDICTED: U-box domain-containing protein 17-like [Cicer arietinum]
COGYP_001957949.17.00E-14hypothetical protein Aasi_0849 [Candidatus Amoebophilus asiaticus 5a2]
Swissprottr|Q9C7R6|PUB17_ARATH0U-box domain-containing protein 17
trEMBLtr|G7ILU6|G7ILU6_MEDTR0Plant U-box protein {ECO:0000313|EMBL:AES64073.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold017804348045630+


Gene family

Gene familysubfamily
Ubiquitin FamilyU_box


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0016567  protein ubiquitination


molecular_function

GO:0004842  ubiquitin-protein transferase activity

GO:0005488  binding

GO:0005515  protein binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001780s00035666.1PF04564.10U-box2883569.80E-20
Glyur001780s00035666.1PF00514.18Arm4224603.80E-08


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control3.980
SRR1783600control3.981
SRR1783602moderate drought stress4.943
SRR1811619moderate drought stress6.066

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain69.361
DRR006520Root Summer glycyrrhizin high producing strain66.912
DRR006521Root Winter glycyrrhizin high producing strain5.715
DRR006522Root Winter glycyrrhizin high producing strain5.417
DRR006523Root Summer glycyrrhizin low producing strain132.174
DRR006524Root Summer glycyrrhizin low producing strain132.018
DRR006525Leaf Summer glycyrrhizin high producing strain43.406
DRR006526Leaf Summer glycyrrhizin high producing strain43.165

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)27.714
SRR2868004Drought Stress(Tissue:root)57.162
SRR2967015Control (Tissue:root)124.936

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave177.413
SRR9715740Leave204.218
SRR9715741Leave206.760
SRR9715739Root228.059
SRR9715742Root324.842
SRR9715743Root295.842

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h124.012
SRR8749028MeJA induced 9h157.606
SRR8749029MeJA induced 9h88.353
SRR8749030Uninduced131.801
SRR8749031Uninduced84.436
SRR8749032Uninduced94.078

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root24.430
SRR8400027Control-Root40.594

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved