Gene detail information of Glyur001780s00035671.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G18880.15.00E-27heat shock transcription factor A4A
NRAGJ83756.11.16E-117heat stress transcription factor A-4a-like protein [Caragana korshinskii]
Swissprottr|Q9FK72|HFA4C_ARATH5.00E-49Heat stress transcription factor A-4c
trEMBLtr|R9R6C4|R9R6C4_9FABA4.00E-118Heat stress transcription factor A-4a-like protein {ECO:0000313|EMBL:AGJ83756.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold017805697358778-


Gene family

Gene familysubfamily
Transcription Factors FamilyHSF


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

biological_process

GO:0006355  regulation of transcription, DNA-templated

GO:0009408  response to heat


cellular_component

GO:0005634  nucleus


molecular_function

GO:0003700  transcription factor activity, sequence-specific DNA binding

GO:0043565  sequence-specific DNA binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001780s00035671.1PF00447.12HSF_DNA-bind16933.70E-22


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control7.185
SRR1783600control7.225
SRR1783602moderate drought stress14.024
SRR1811619moderate drought stress13.502

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain24.449
DRR006520Root Summer glycyrrhizin high producing strain25.477
DRR006521Root Winter glycyrrhizin high producing strain30.846
DRR006522Root Winter glycyrrhizin high producing strain28.736
DRR006523Root Summer glycyrrhizin low producing strain48.827
DRR006524Root Summer glycyrrhizin low producing strain50.253
DRR006525Leaf Summer glycyrrhizin high producing strain6.147
DRR006526Leaf Summer glycyrrhizin high producing strain5.699

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)14.184
SRR2868004Drought Stress(Tissue:root)27.429
SRR2967015Control (Tissue:root)27.649

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave34.028
SRR9715740Leave40.595
SRR9715741Leave53.891
SRR9715739Root15.568
SRR9715742Root39.511
SRR9715743Root34.661

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h21.310
SRR8749028MeJA induced 9h63.215
SRR8749029MeJA induced 9h37.471
SRR8749030Uninduced42.026
SRR8749031Uninduced42.990
SRR8749032Uninduced29.483

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root10.482
SRR8400027Control-Root16.732

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved