Gene detail information of Glyur001793s00029323.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G29380.10protein kinase family protein / WD-40 repeat family protein
NRXP_004513057.10PREDICTED: probable serine/threonine-protein kinase vps15-like isoform X2 [Cicer arietinum]
COGYP_007142396.15.00E-08WD40 repeat-containing protein [Crinalium epipsammum PCC 9333]
trEMBLtr|A0A072UCN9|A0A072UCN9_MEDTR0Phosphoinositide 3-kinase regulatory subunit-like protein {ECO:0000313|EMBL:KEH27226.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold017931802722872-


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K08333PIK3R4, VPS15 EC:2.7.11.1 Autophagy - animal map04140
Autophagy - yeastmap04138


Gene Ontology

molecular_function

GO:0005488  binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
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Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control18.770
SRR1783600control18.256
SRR1783602moderate drought stress11.992
SRR1811619moderate drought stress11.900

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain10.184
DRR006520Root Summer glycyrrhizin high producing strain10.141
DRR006521Root Winter glycyrrhizin high producing strain10.090
DRR006522Root Winter glycyrrhizin high producing strain9.770
DRR006523Root Summer glycyrrhizin low producing strain10.620
DRR006524Root Summer glycyrrhizin low producing strain10.639
DRR006525Leaf Summer glycyrrhizin high producing strain4.533
DRR006526Leaf Summer glycyrrhizin high producing strain4.652

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)15.236
SRR2868004Drought Stress(Tissue:root)14.982
SRR2967015Control (Tissue:root)18.790

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave9.081
SRR9715740Leave9.701
SRR9715741Leave11.723
SRR9715739Root3.753
SRR9715742Root13.701
SRR9715743Root11.401

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h11.092
SRR8749028MeJA induced 9h9.398
SRR8749029MeJA induced 9h7.679
SRR8749030Uninduced8.439
SRR8749031Uninduced6.197
SRR8749032Uninduced6.200

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root40.213
SRR8400027Control-Root33.940

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved