Gene detail information of Glyur001793s00029324.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G29380.13.00E-54protein kinase family protein / WD-40 repeat family protein
NRKEH27226.16.74E-78phosphoinositide 3-kinase regulatory subunit-like protein [Medicago truncatula]
COGYP_007162834.16.00E-06WD40 repeat-containing protein [Cyanobacterium aponinum PCC 10605]
trEMBLtr|A0A072UCN9|A0A072UCN9_MEDTR3.00E-78Phosphoinositide 3-kinase regulatory subunit-like protein {ECO:0000313|EMBL:KEH27226.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold017933076631212-


Gene family

Gene familysubfamily
Ubiquitin FamilyDWD


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K08333PIK3R4, VPS15 EC:2.7.11.1 Autophagy - animal map04140
Autophagy - yeastmap04138


Gene Ontology

molecular_function

GO:0005515  protein binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001793s00029324.1PF00400.27WD4044812.40E-09


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control6.813
SRR1783600control6.669
SRR1783602moderate drought stress2.896
SRR1811619moderate drought stress2.533

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain3.934
DRR006520Root Summer glycyrrhizin high producing strain2.900
DRR006521Root Winter glycyrrhizin high producing strain2.244
DRR006522Root Winter glycyrrhizin high producing strain2.869
DRR006523Root Summer glycyrrhizin low producing strain1.831
DRR006524Root Summer glycyrrhizin low producing strain0.864
DRR006525Leaf Summer glycyrrhizin high producing strain0.416
DRR006526Leaf Summer glycyrrhizin high producing strain0.519

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)5.837
SRR2868004Drought Stress(Tissue:root)1.846
SRR2967015Control (Tissue:root)5.284

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave5.217
SRR9715740Leave1.791
SRR9715741Leave4.536
SRR9715739Root1.108
SRR9715742Root3.048
SRR9715743Root2.621

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.323
SRR8749028MeJA induced 9h0.045
SRR8749029MeJA induced 9h0.026
SRR8749030Uninduced0.207
SRR8749031Uninduced0.000
SRR8749032Uninduced0.814

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root33.248
SRR8400027Control-Root27.773

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved