Gene detail information of Glyur001793s00029325.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G26300.10Arginyl-tRNA synthetase, class Ic
NRAHF48761.10arginyl-tRNA synthetase [Dioclea megacarpa]
COGYP_003710058.11.00E-154Arginyl-tRNA synthetase [Waddlia chondrophila WSU 86-1044]
trEMBLtr|W0G2X0|W0G2X0_9FABA0Arginyl-tRNA synthetase {ECO:0000313|EMBL:AHF48761.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold017933967446507-


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01887RARS, argS EC:6.1.1.19 Aminoacyl-tRNA biosynthesis map00970


Gene Ontology

biological_process

GO:0006418  tRNA aminoacylation for protein translation

GO:0006420  arginyl-tRNA aminoacylation


cellular_component

GO:0005737  cytoplasm


molecular_function

GO:0000166  nucleotide binding

GO:0004812  aminoacyl-tRNA ligase activity

GO:0004814  arginine-tRNA ligase activity

GO:0005524  ATP binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001793s00029325.2PF03485.11Arg_tRNA_synt_N141069.50E-15
Glyur001793s00029325.2PF00750.14tRNA-synt_1d1334561.00E-81
Glyur001793s00029325.2PF05746.10DALR_14705172.00E-07


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control37.389
SRR1783600control37.416
SRR1783602moderate drought stress39.738
SRR1811619moderate drought stress39.640

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain62.095
DRR006520Root Summer glycyrrhizin high producing strain62.101
DRR006521Root Winter glycyrrhizin high producing strain70.156
DRR006522Root Winter glycyrrhizin high producing strain68.277
DRR006523Root Summer glycyrrhizin low producing strain60.936
DRR006524Root Summer glycyrrhizin low producing strain61.871
DRR006525Leaf Summer glycyrrhizin high producing strain30.317
DRR006526Leaf Summer glycyrrhizin high producing strain30.478

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)125.918
SRR2868004Drought Stress(Tissue:root)105.273
SRR2967015Control (Tissue:root)111.121

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave56.029
SRR9715740Leave61.650
SRR9715741Leave58.581
SRR9715739Root23.041
SRR9715742Root52.255
SRR9715743Root48.964

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h102.572
SRR8749028MeJA induced 9h82.352
SRR8749029MeJA induced 9h84.079
SRR8749030Uninduced47.401
SRR8749031Uninduced54.287
SRR8749032Uninduced52.951

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root98.544
SRR8400027Control-Root92.349

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved