Gene detail information of Glyur001793s00029327.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G26300.10Arginyl-tRNA synthetase, class Ic
NRXP_004513061.10PREDICTED: arginine--tRNA ligase, cytoplasmic-like isoform X1 [Cicer arietinum]
COGYP_723483.12.00E-128arginyl-tRNA synthetase [Trichodesmium erythraeum IMS101]
trEMBLtr|A0A072UDN7|A0A072UDN7_MEDTR0Cytoplasmic-like arginine-tRNA ligase {ECO:0000313|EMBL:KEH27228.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold017935235858056+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01887RARS, argS EC:6.1.1.19 Aminoacyl-tRNA biosynthesis map00970


Gene Ontology

biological_process

GO:0006418  tRNA aminoacylation for protein translation

GO:0006420  arginyl-tRNA aminoacylation


cellular_component

GO:0005737  cytoplasm


molecular_function

GO:0000166  nucleotide binding

GO:0004812  aminoacyl-tRNA ligase activity

GO:0004814  arginine-tRNA ligase activity

GO:0005524  ATP binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001793s00029327.1PF03485.11Arg_tRNA_synt_N1001611.60E-13
Glyur001793s00029327.1PF00750.14tRNA-synt_1d1895031.70E-89


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control20.963
SRR1783600control20.901
SRR1783602moderate drought stress23.650
SRR1811619moderate drought stress23.816

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain30.212
DRR006520Root Summer glycyrrhizin high producing strain29.592
DRR006521Root Winter glycyrrhizin high producing strain21.621
DRR006522Root Winter glycyrrhizin high producing strain21.035
DRR006523Root Summer glycyrrhizin low producing strain31.615
DRR006524Root Summer glycyrrhizin low producing strain32.149
DRR006525Leaf Summer glycyrrhizin high producing strain35.548
DRR006526Leaf Summer glycyrrhizin high producing strain34.898

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)19.336
SRR2868004Drought Stress(Tissue:root)20.551
SRR2967015Control (Tissue:root)21.969

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave21.258
SRR9715740Leave26.029
SRR9715741Leave23.802
SRR9715739Root2.132
SRR9715742Root11.774
SRR9715743Root9.809

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h23.916
SRR8749028MeJA induced 9h29.693
SRR8749029MeJA induced 9h24.129
SRR8749030Uninduced19.747
SRR8749031Uninduced13.265
SRR8749032Uninduced17.068

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root18.210
SRR8400027Control-Root20.490

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved