Gene detail information of Glyur001798s00037316.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G11730.1 | 5.00E-152 | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein |
| NR | XP_003550286.1 | 0 | PREDICTED: uncharacterized protein LOC100785919 [Glycine max] |
| trEMBL | tr|I1MXD9|I1MXD9_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G34930.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01798 | 28207 | 33584 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GTnc |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001798s00037316.1 | PF02485.16 | Branch | 116 | 343 | 2.90E-86 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 12.113 |
| SRR1783600 | control | 12.198 |
| SRR1783602 | moderate drought stress | 7.454 |
| SRR1811619 | moderate drought stress | 7.567 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 20.924 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 20.717 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 10.184 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 9.920 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 30.701 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 31.289 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.411 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.475 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 9.781 |
| SRR2868004 | Drought Stress(Tissue:root) | 7.522 |
| SRR2967015 | Control (Tissue:root) | 9.179 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 10.981 |
| SRR9715740 | Leave | 14.420 |
| SRR9715741 | Leave | 13.803 |
| SRR9715739 | Root | 27.198 |
| SRR9715742 | Root | 49.121 |
| SRR9715743 | Root | 38.373 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 30.284 |
| SRR8749028 | MeJA induced 9h | 22.116 |
| SRR8749029 | MeJA induced 9h | 30.025 |
| SRR8749030 | Uninduced | 25.649 |
| SRR8749031 | Uninduced | 10.611 |
| SRR8749032 | Uninduced | 11.981 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 11.223 |
| SRR8400027 | Control-Root | 17.371 |