Gene detail information of Glyur001798s00037317.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| NR | XP_007160984.1 | 4.44E-07 | hypothetical protein PHAVU_001G033400g [Phaseolus vulgaris] |
| trEMBL | tr|K7M5U9|K7M5U9_SOYBN | 4.00E-08 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA14G10590.1} (Fragment) |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01798 | 41348 | 41781 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01070 | frmB, ESD, fghA | EC:3.1.2.12 | Carbon metabolism | map01200 |
| Methane metabolism | map00680 |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 178.416 |
| SRR1783600 | control | 104.036 |
| SRR1783602 | moderate drought stress | 87.842 |
| SRR1811619 | moderate drought stress | 42.350 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1036.776 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1017.377 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 301.007 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 290.490 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1117.475 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1088.275 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 223.010 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 231.050 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 395.835 |
| SRR2868004 | Drought Stress(Tissue:root) | 198.565 |
| SRR2967015 | Control (Tissue:root) | 267.357 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 290.932 |
| SRR9715740 | Leave | 217.485 |
| SRR9715741 | Leave | 162.245 |
| SRR9715739 | Root | 854.190 |
| SRR9715742 | Root | 940.469 |
| SRR9715743 | Root | 827.380 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 282.265 |
| SRR8749028 | MeJA induced 9h | 128.481 |
| SRR8749029 | MeJA induced 9h | 225.243 |
| SRR8749030 | Uninduced | 66.619 |
| SRR8749031 | Uninduced | 19.270 |
| SRR8749032 | Uninduced | 85.734 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 433.720 |
| SRR8400027 | Control-Root | 624.722 |