Gene detail information of Glyur001807s00034283.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G12670.10CTP synthase family protein
NRABN08198.10Glutamine amidotransferase, class I, active site [Medicago truncatula]
COGYP_003483162.10CTP synthase [Aciduliprofundum boonei T469]
trEMBLtr|A2Q3J8|A2Q3J8_MEDTR0CTP synthase {ECO:0000256|RuleBase:RU810713}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold018072784034952+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01937pyrG, CTPS EC:6.3.4.2 Pyrimidine metabolism map00240


Gene Ontology

biological_process

GO:0006221  pyrimidine nucleotide biosynthetic process


molecular_function

GO:0003883  CTP synthase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001807s00034283.1PF06418.9CTP_synth_N12841.20E-123
Glyur001807s00034283.1PF00117.23GATase3095449.80E-57


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control16.765
SRR1783600control16.804
SRR1783602moderate drought stress14.479
SRR1811619moderate drought stress14.564

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain16.275
DRR006520Root Summer glycyrrhizin high producing strain15.984
DRR006521Root Winter glycyrrhizin high producing strain17.194
DRR006522Root Winter glycyrrhizin high producing strain16.667
DRR006523Root Summer glycyrrhizin low producing strain35.657
DRR006524Root Summer glycyrrhizin low producing strain35.494
DRR006525Leaf Summer glycyrrhizin high producing strain11.542
DRR006526Leaf Summer glycyrrhizin high producing strain11.590

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)27.882
SRR2868004Drought Stress(Tissue:root)28.028
SRR2967015Control (Tissue:root)31.746

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave36.141
SRR9715740Leave29.558
SRR9715741Leave39.326
SRR9715739Root20.154
SRR9715742Root47.016
SRR9715743Root42.171

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h57.420
SRR8749028MeJA induced 9h142.367
SRR8749029MeJA induced 9h91.102
SRR8749030Uninduced88.108
SRR8749031Uninduced97.637
SRR8749032Uninduced66.485

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root48.789
SRR8400027Control-Root49.279

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved