Gene detail information of Glyur001811s00040227.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G56960.1 | 2.00E-56 | basic helix-loop-helix (bHLH) DNA-binding family protein |
| NR | XP_003595200.1 | 0 | Transcription factor MYC4 [Medicago truncatula] |
| Swissprot | tr|Q9LTS4|BH041_ARATH | 1.00E-77 | Putative transcription factor bHLH041 |
| trEMBL | tr|G7IIK8|G7IIK8_MEDTR | 0 | Basic helix loop helix (BHLH) DNA-binding family protein {ECO:0000313|EMBL:AES65451.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01811 | 37697 | 43253 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | bHLH |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001811s00040227.1 | PF00010.21 | HLH | 358 | 402 | 1.20E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.455 |
| SRR1783600 | control | 1.272 |
| SRR1783602 | moderate drought stress | 0.696 |
| SRR1811619 | moderate drought stress | 0.681 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.171 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.283 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.210 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.172 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 3.879 |
| SRR2868004 | Drought Stress(Tissue:root) | 13.596 |
| SRR2967015 | Control (Tissue:root) | 4.831 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 2.911 |
| SRR9715740 | Leave | 3.884 |
| SRR9715741 | Leave | 7.231 |
| SRR9715739 | Root | 1.398 |
| SRR9715742 | Root | 2.676 |
| SRR9715743 | Root | 2.119 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.171 |
| SRR8749028 | MeJA induced 9h | 0.075 |
| SRR8749029 | MeJA induced 9h | 0.110 |
| SRR8749030 | Uninduced | 3.852 |
| SRR8749031 | Uninduced | 2.599 |
| SRR8749032 | Uninduced | 0.975 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 2.645 |
| SRR8400027 | Control-Root | 3.339 |