Gene detail information of Glyur001814s00036627.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G57970.2 | 2.00E-90 | DNA glycosylase superfamily protein |
| NR | XP_003527169.1 | 0 | PREDICTED: uncharacterized protein LOC100801026 isoform X1 [Glycine max] |
| COG | YP_005441838.1 | 4.00E-34 | 3-methyladenine DNA glycosylase [Caldilinea aerophila DSM 14535 = NBRC 104270] |
| trEMBL | tr|K7KWJ8|K7KWJ8_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G27640.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01814 | 35200 | 39365 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01246 | tag | EC:3.2.2.20 | Base excision repair | map03410 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001814s00036627.1 | PF03352.8 | Adenine_glyco | 158 | 290 | 1.90E-37 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.839 |
| SRR1783600 | control | 4.815 |
| SRR1783602 | moderate drought stress | 4.018 |
| SRR1811619 | moderate drought stress | 4.018 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 11.392 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.064 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.379 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.429 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.802 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.570 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.028 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.961 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 6.260 |
| SRR2868004 | Drought Stress(Tissue:root) | 3.266 |
| SRR2967015 | Control (Tissue:root) | 4.005 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 2.506 |
| SRR9715740 | Leave | 1.038 |
| SRR9715741 | Leave | 1.634 |
| SRR9715739 | Root | 6.150 |
| SRR9715742 | Root | 5.935 |
| SRR9715743 | Root | 7.236 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.151 |
| SRR8749028 | MeJA induced 9h | 1.211 |
| SRR8749029 | MeJA induced 9h | 0.476 |
| SRR8749030 | Uninduced | 0.313 |
| SRR8749031 | Uninduced | 0.018 |
| SRR8749032 | Uninduced | 0.046 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 11.218 |
| SRR8400027 | Control-Root | 12.760 |