Gene detail information of Glyur001820s00032862.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G07670.1 | 1.00E-137 | RNI-like superfamily protein |
| NR | XP_004516334.1 | 0 | PREDICTED: F-box protein At5g07670-like [Cicer arietinum] |
| Swissprot | tr|Q8VYT5|FB254_ARATH | 1.00E-168 | F-box protein At5g07670 |
| trEMBL | tr|A0A072UUZ8|A0A072UUZ8_MEDTR | 0 | F-box plant-like protein {ECO:0000313|EMBL:KEH32853.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01820 | 42323 | 45424 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001820s00032862.1 | PF12937.2 | F-box-like | 84 | 111 | 1.40E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 11.056 |
| SRR1783600 | control | 10.888 |
| SRR1783602 | moderate drought stress | 17.156 |
| SRR1811619 | moderate drought stress | 17.581 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 11.633 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.293 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.922 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.967 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 10.609 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 10.258 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 15.290 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 14.931 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 23.793 |
| SRR2868004 | Drought Stress(Tissue:root) | 28.705 |
| SRR2967015 | Control (Tissue:root) | 31.487 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 16.153 |
| SRR9715740 | Leave | 22.828 |
| SRR9715741 | Leave | 19.611 |
| SRR9715739 | Root | 5.212 |
| SRR9715742 | Root | 9.866 |
| SRR9715743 | Root | 9.147 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 10.005 |
| SRR8749028 | MeJA induced 9h | 19.397 |
| SRR8749029 | MeJA induced 9h | 8.866 |
| SRR8749030 | Uninduced | 11.367 |
| SRR8749031 | Uninduced | 17.237 |
| SRR8749032 | Uninduced | 11.360 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 23.650 |
| SRR8400027 | Control-Root | 21.270 |