Gene detail information of Glyur001825s00027392.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G16500.17.00E-42phytochrome-associated protein 1
NRXP_003530078.27.05E-122PREDICTED: auxin-responsive protein IAA26-like [Glycine max]
Swissprottr|Q8LAL2|IAA26_ARATH6.00E-52Auxin-responsive protein IAA26
trEMBLtr|K7L7S4|K7L7S4_SOYBN1.00E-122Auxin-induced protein {ECO:0000256|RuleBase:RU004549}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold01825958711695+


Gene family

Gene familysubfamily
Transcription Factors FamilyAUX/IAA
EAR motif-containing ProteinsAUX/IAA


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

biological_process

GO:0006355  regulation of transcription, DNA-templated


cellular_component

GO:0005634  nucleus


molecular_function

GO:0046983  protein dimerization activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001825s00027392.1PF02309.11AUX_IAA493247.50E-35


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control8.991
SRR1783600control9.054
SRR1783602moderate drought stress13.710
SRR1811619moderate drought stress13.708

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain2.421
DRR006520Root Summer glycyrrhizin high producing strain2.493
DRR006521Root Winter glycyrrhizin high producing strain0.228
DRR006522Root Winter glycyrrhizin high producing strain0.222
DRR006523Root Summer glycyrrhizin low producing strain3.227
DRR006524Root Summer glycyrrhizin low producing strain3.318
DRR006525Leaf Summer glycyrrhizin high producing strain1.332
DRR006526Leaf Summer glycyrrhizin high producing strain1.230

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)5.373
SRR2868004Drought Stress(Tissue:root)4.199
SRR2967015Control (Tissue:root)5.274

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave1.500
SRR9715740Leave1.136
SRR9715741Leave1.194
SRR9715739Root4.331
SRR9715742Root8.853
SRR9715743Root6.929

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h6.270
SRR8749028MeJA induced 9h8.859
SRR8749029MeJA induced 9h2.273
SRR8749030Uninduced1.658
SRR8749031Uninduced0.965
SRR8749032Uninduced0.761

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root11.134
SRR8400027Control-Root10.894

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved