Gene detail information of Glyur001825s00027393.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G51940.10protein kinase family protein / peptidoglycan-binding LysM domain-containing protein
NRBAI79272.10LysM type receptor kinase [Lotus japonicus]
COGYP_003270695.18.00E-26serine/threonine protein kinase [Haliangium ochraceum DSM 14365]
Swissprottr|F4IB81|LYK3_ARATH0LysM domain receptor-like kinase 3 (Precursor)
trEMBLtr|D3KTZ5|D3KTZ5_LOTJA0LysM type receptor kinase {ECO:0000313|EMBL:BAI79272.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold018251916924224+


Gene family

Gene familysubfamily
Protein Kinases FamilyPPC:1.1.3


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0006468  protein phosphorylation


molecular_function

GO:0004672  protein kinase activity

GO:0005524  ATP binding

GO:0016772  transferase activity, transferring phosphorus-containing groups


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001825s00027393.1PF01476.15LysM1591944.40E-05
Glyur001825s00027393.1PF07714.12Pkinase_Tyr3636361.50E-48


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control7.235
SRR1783600control7.306
SRR1783602moderate drought stress10.942
SRR1811619moderate drought stress10.648

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain9.066
DRR006520Root Summer glycyrrhizin high producing strain8.582
DRR006521Root Winter glycyrrhizin high producing strain16.044
DRR006522Root Winter glycyrrhizin high producing strain15.142
DRR006523Root Summer glycyrrhizin low producing strain11.573
DRR006524Root Summer glycyrrhizin low producing strain11.706
DRR006525Leaf Summer glycyrrhizin high producing strain6.169
DRR006526Leaf Summer glycyrrhizin high producing strain6.272

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)21.917
SRR2868004Drought Stress(Tissue:root)14.935
SRR2967015Control (Tissue:root)20.546

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave4.159
SRR9715740Leave6.222
SRR9715741Leave4.339
SRR9715739Root3.660
SRR9715742Root9.683
SRR9715743Root7.595

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h5.497
SRR8749028MeJA induced 9h4.312
SRR8749029MeJA induced 9h2.311
SRR8749030Uninduced1.477
SRR8749031Uninduced0.180
SRR8749032Uninduced0.875

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root16.512
SRR8400027Control-Root21.013

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved