Gene detail information of Glyur001829s00033194.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G10240.1 | 3.00E-93 | FAR1-related sequence 11 |
| NR | XP_003615778.1 | 0 | FAR1-related protein [Medicago truncatula] |
| Swissprot | tr|Q9SY66|FRS11_ARATH | 4.00E-106 | Protein FAR1-RELATED SEQUENCE 11 |
| trEMBL | tr|B9SW49|B9SW49_RICCO | 4.00E-157 | Putative uncharacterized protein {ECO:0000313|EMBL:EEF32165.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01829 | 12754 | 16311 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | FAR1 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001829s00033194.1 | PF03101.10 | FAR1 | 29 | 100 | 8.50E-14 |
| Glyur001829s00033194.1 | PF10551.4 | MULE | 175 | 231 | 3.20E-09 |
| Glyur001829s00033194.1 | PF04434.12 | SWIM | 422 | 446 | 1.80E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.149 |
| SRR1783600 | control | 0.105 |
| SRR1783602 | moderate drought stress | 0.222 |
| SRR1811619 | moderate drought stress | 0.189 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.498 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.547 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.462 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.327 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.350 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.293 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.040 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.030 |
| SRR2967015 | Control (Tissue:root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.042 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.102 |
| SRR9715742 | Root | 0.032 |
| SRR9715743 | Root | 0.141 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.038 |
| SRR8749028 | MeJA induced 9h | 0.035 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.063 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.153 |
| SRR8400027 | Control-Root | 0.134 |