Gene detail

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Gene detail information of Glyur001829s00033195.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G62220.1	0	glycosyltransferase 18
NR	XP_004496651.1	0	PREDICTED: xyloglucan galactosyltransferase KATAMARI1 homolog [Cicer arietinum]
Swissprot	tr\|Q8H038\|KATAM_ORYSJ	1.00E-103	Xyloglucan galactosyltransferase KATAMARI1 homolog
trEMBL	tr\|G7ID54\|G7ID54_MEDTR	0	Xyloglucan galactosyltransferase KATAMARI-like protein {ECO:0000313\|EMBL:AES62644.2}

Sequence

Transcript Sequence

>Glyur001829s00033195.1
ATGCTTCCCAAGCCACTTCACCCCTCGCCGGAAACACAACCGCTCAGACTCTCCGACACCAAGACCAAGACCTCCCTCACCGCCATACTCCAATCGCTCTTCTCCCCTCAAAACCCTCGAGCATGGATTCTCTTCACCGTCCTCTTCATCCAGATCCTCTTCCTCTGCAACCTCCGTAGCTTCCCCACCTCAATCTCCATCCCCCACCGCCACCTCCCCCCCACTCCCCTCGCCGCCATCCAAAACGCCGTCGCCGCCGAAACTGAACCCCCTCAAAACAACACCGTCCACGACCGTTCCCCCATCNGCGACCGCGACCAATGTGGCTCCGGCAGGGTTTTCGTCTACGACCTCCCCAAAACCTTCAACCGAGAAATCCTCGACAATTGCGACAACCTCAACCCCTGGAGCTCTCGCTGCGACGCCCTCTCCAACGACGGCTTCGGGCAACCGGCAACCGGGCTCTCCGGAATCGTGCCGGAGGATCTCCTCCCGGCGTGGTACTGGACGGACCAATTCGTCTCCGAAATCATCTTCCACAACCGCATACTAAACCACGAGTGCAGGACCACAGAGCCAGAATCCGCTACAGCGTTCTACATCCCGTTCTACGCTGGACTCGCGGTGGGGAAGTACCTGTGGACAAGCTCAACCGCAGAGGATCGCGATCGCCACTGCGAGATGATGCTGAGGTGGCTCCATGAACAACCGCATTNCAGAAGATCCAACGGCTGGGATCACTTCATCACGATGGGGCGCATCACATGGGATTTTCGCCGCTCCAAGGACGAGGATTGGGGTTCTAGCTGCATCTACAAGCCAGGGATTAGGAACATCACACGCCTTCTCATCGAGCGCAACCCATGGGACTATTTCGACATCGGTGTTCCCTACCCCACCGGATTCCACCCCCGCTCCCATAACGACGTCACTCGCTGGCAGAGCTTCGTCCGCGAGCGCCGCCGCCACGCGCTCTTCTGCTTCGCCGGCGCTCCACGCCGCGCCTTCCGCAACGATTTCAGGGGGGTGCTGCTGAACCAGTGCCGCGANTCGGCCGGGTCGTGCCGCCACGTGGACTGCGGCGGGTCACGGTGCTCGAACGGAACGTCGGCGATCCTCGAGACGTTTCTCGACTCGGATTTTTGCTTGCAGCCGAGGGGGGACAGCTTCACGCGCCGGTCGATTTTCGATTGTATGGTGGCCGGTTCGATCCCGGTTTTCTTCTGGCGGCGAACCGCGTATTTGCAGTATGAGTGGTTCTTGCCGGGTGAACCGGGGAGTTACTCGGTTTACATAGACCGGAATGCGGTGAAGAATGGGACCTNCGTGAAATCCGTGCTTGAAGGGTACTCCAAGGAGGAGGTGAGGAAAATGAGGGAGAAAGTGATCGAGTACATTCCGAGGTTGGTTTATGCAAGACATAACAATGGGTTAGAGGGTATGAAGGATGCTTTCGATGTTGCCATGGAAGGGGTCTTAACACGGTTCAAGGATCAACAACAACCTGGGTTTCAGAAGTGGAAATAA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold01829	27438	28964	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT47

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001829s00033195.1	PF03016.10	Exostosin	108	448	8.60E-66

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	80.554
SRR1783600	control	79.087
SRR1783602	moderate drought stress	75.290
SRR1811619	moderate drought stress	72.283

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	128.111
DRR006520	Root Summer glycyrrhizin high producing strain	127.913
DRR006521	Root Winter glycyrrhizin high producing strain	81.615
DRR006522	Root Winter glycyrrhizin high producing strain	79.434
DRR006523	Root Summer glycyrrhizin low producing strain	220.891
DRR006524	Root Summer glycyrrhizin low producing strain	221.869
DRR006525	Leaf Summer glycyrrhizin high producing strain	26.442
DRR006526	Leaf Summer glycyrrhizin high producing strain	26.240

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	21.809
SRR2868004	Drought Stress(Tissue:root)	15.886
SRR2967015	Control (Tissue:root)	17.879

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	39.544
SRR9715740	Leave	29.793
SRR9715741	Leave	31.856
SRR9715739	Root	133.350
SRR9715742	Root	177.900
SRR9715743	Root	162.074

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	113.912
SRR8749028	MeJA induced 9h	120.652
SRR8749029	MeJA induced 9h	141.518
SRR8749030	Uninduced	230.488
SRR8749031	Uninduced	68.090
SRR8749032	Uninduced	82.752

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	42.658
SRR8400027	Control-Root	58.380