Gene detail information of Glyur001829s00033200.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G28100.1 | 3.00E-125 | alpha-L-fucosidase 1 |
| NR | XP_003592377.1 | 0 | Alpha-L-fucosidase [Medicago truncatula] |
| COG | YP_005012894.1 | 5.00E-118 | alpha-L-fucosidase [Niastella koreensis GR20-10] |
| Swissprot | tr|Q8GW72|FUCO1_ARATH | 4.00E-157 | Alpha-L-fucosidase 1 (Precursor) |
| trEMBL | tr|G7ID38|G7ID38_MEDTR | 0 | Alpha-L-fucosidase-like protein {ECO:0000313|EMBL:AES62628.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01829 | 51717 | 54937 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH29 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01206 | FUCA | EC:3.2.1.51 | Other glycan degradation | map00511 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001829s00033200.1 | PF01120.12 | Alpha_L_fucos | 78 | 176 | 2.90E-22 |
| Glyur001829s00033200.1 | PF01120.12 | Alpha_L_fucos | 292 | 354 | 6.80E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.053 |
| SRR1783600 | control | 8.934 |
| SRR1783602 | moderate drought stress | 3.663 |
| SRR1811619 | moderate drought stress | 3.786 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 23.715 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 23.704 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.066 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.027 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.147 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.005 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.287 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 17.531 |
| SRR2868004 | Drought Stress(Tissue:root) | 10.243 |
| SRR2967015 | Control (Tissue:root) | 8.818 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 3.095 |
| SRR9715740 | Leave | 1.761 |
| SRR9715741 | Leave | 1.824 |
| SRR9715739 | Root | 2.275 |
| SRR9715742 | Root | 5.793 |
| SRR9715743 | Root | 4.948 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 23.509 |
| SRR8400027 | Control-Root | 17.866 |