Gene detail information of Glyur001830s00040096.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G09230.16.00E-75myb domain protein 1
NRAHB59593.10putative R2R3 MYB protein 5 [Arachis hypogaea]
Swissprottr|Q9FDW1|MYB44_ARATH8.00E-41Transcription factor MYB44
trEMBLtr|V5T701|V5T701_ARAHY0Putative R2R3 MYB protein 5 {ECO:0000313|EMBL:AHB59593.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold01830505021800+


Gene family

Gene familysubfamily
Transcription Factors FamilyMYB


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0003677  DNA binding

GO:0003682  chromatin binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001830s00040096.1PF00249.26Myb_DNA-binding38831.90E-14
Glyur001830s00040096.1PF00249.26Myb_DNA-binding881242.60E-11


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control12.526
SRR1783600control12.796
SRR1783602moderate drought stress14.349
SRR1811619moderate drought stress14.315

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain10.563
DRR006520Root Summer glycyrrhizin high producing strain11.193
DRR006521Root Winter glycyrrhizin high producing strain17.104
DRR006522Root Winter glycyrrhizin high producing strain16.652
DRR006523Root Summer glycyrrhizin low producing strain11.165
DRR006524Root Summer glycyrrhizin low producing strain11.162
DRR006525Leaf Summer glycyrrhizin high producing strain4.098
DRR006526Leaf Summer glycyrrhizin high producing strain4.147

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)10.808
SRR2868004Drought Stress(Tissue:root)12.215
SRR2967015Control (Tissue:root)12.889

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave4.598
SRR9715740Leave4.262
SRR9715741Leave6.069
SRR9715739Root5.713
SRR9715742Root12.935
SRR9715743Root9.441

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h15.908
SRR8749028MeJA induced 9h16.295
SRR8749029MeJA induced 9h4.995
SRR8749030Uninduced3.096
SRR8749031Uninduced0.785
SRR8749032Uninduced1.729

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root14.884
SRR8400027Control-Root14.579

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved