Gene detail information of Glyur001836s00028584.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G16830.10TOPLESS-related 2
NRXP_004508183.10PREDICTED: topless-related protein 2-like [Cicer arietinum]
COGYP_007125238.11.00E-12WD40 repeat-containing protein [Microcoleus sp. PCC 7113]
Swissprottr|Q9LRZ0|TPR2_ARATH0Topless-related protein 2
trEMBLtr|G7JMQ4|G7JMQ4_MEDTR0Topless-like protein {ECO:0000313|EMBL:AES91919.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold018361935227540-


Gene family

Gene familysubfamily
Ubiquitin FamilyDWD


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

biological_process

GO:0006355  regulation of transcription, DNA-templated


molecular_function

GO:0005515  protein binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001836s00028584.1PF00400.27WD403433780.0035
Glyur001836s00028584.1PF00400.27WD404154512.40E-05
Glyur001836s00028584.1PF00400.27WD404574930.0014
Glyur001836s00028584.1PF00400.27WD408709050.00045


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control42.450
SRR1783600control42.595
SRR1783602moderate drought stress52.819
SRR1811619moderate drought stress52.667

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain31.903
DRR006520Root Summer glycyrrhizin high producing strain31.464
DRR006521Root Winter glycyrrhizin high producing strain47.123
DRR006522Root Winter glycyrrhizin high producing strain46.031
DRR006523Root Summer glycyrrhizin low producing strain30.185
DRR006524Root Summer glycyrrhizin low producing strain29.867
DRR006525Leaf Summer glycyrrhizin high producing strain16.162
DRR006526Leaf Summer glycyrrhizin high producing strain16.090

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)41.146
SRR2868004Drought Stress(Tissue:root)46.787
SRR2967015Control (Tissue:root)42.402

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave15.753
SRR9715740Leave21.962
SRR9715741Leave19.181
SRR9715739Root14.798
SRR9715742Root37.424
SRR9715743Root34.626

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h30.567
SRR8749028MeJA induced 9h43.078
SRR8749029MeJA induced 9h23.827
SRR8749030Uninduced25.246
SRR8749031Uninduced17.802
SRR8749032Uninduced15.339

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root39.797
SRR8400027Control-Root37.233

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved