Gene detail information of Glyur001837s00030382.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G04620.20biotin F
NRXP_003527547.10PREDICTED: 5-aminolevulinate synthase, erythroid-specific, mitochondrial-like isoform X1 [Glycine max]
COGYP_743265.13.00E-788-amino-7-oxononanoate synthase [Alkalilimnicola ehrlichii MLHE-1]
Swissprottr|Q8RYL1|LCB2B_ORYSJ4.00E-28Long chain base biosynthesis protein 2b
trEMBLtr|I1KFQ1|I1KFQ1_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G47430.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold01837947215549-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00652bioF EC:2.3.1.47 Biotin metabolism map00780


Gene Ontology

biological_process

GO:0009058  biosynthetic process


molecular_function

GO:0003824  catalytic activity

GO:0030170  pyridoxal phosphate binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001837s00030382.1PF00155.16Aminotran_1_21024606.30E-46


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control5.245
SRR1783600control5.388
SRR1783602moderate drought stress5.204
SRR1811619moderate drought stress5.279

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain5.568
DRR006520Root Summer glycyrrhizin high producing strain5.606
DRR006521Root Winter glycyrrhizin high producing strain11.129
DRR006522Root Winter glycyrrhizin high producing strain10.584
DRR006523Root Summer glycyrrhizin low producing strain4.716
DRR006524Root Summer glycyrrhizin low producing strain4.868
DRR006525Leaf Summer glycyrrhizin high producing strain7.666
DRR006526Leaf Summer glycyrrhizin high producing strain7.530

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)16.285
SRR2868004Drought Stress(Tissue:root)15.501
SRR2967015Control (Tissue:root)13.321

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave6.122
SRR9715740Leave5.502
SRR9715741Leave7.580
SRR9715739Root3.448
SRR9715742Root6.528
SRR9715743Root5.449

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h17.909
SRR8749028MeJA induced 9h14.662
SRR8749029MeJA induced 9h14.615
SRR8749030Uninduced32.638
SRR8749031Uninduced24.544
SRR8749032Uninduced21.045

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root16.891
SRR8400027Control-Root14.890

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved