Gene detail

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Gene detail information of Glyur001837s00030385.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G64740.1	0	cellulose synthase 6
NR	XP_004499618.1	0	PREDICTED: probable cellulose synthase A catalytic subunit 3 [UDP-forming]-like [Cicer arietinum]
COG	YP_007129238.1	1.00E-10	glycosyl transferase family 2 [Gloeocapsa sp. PCC 7428]
Swissprot	tr\|Q69V23\|CESA3_ORYSJ	0	Probable cellulose synthase A catalytic subunit 3 [UDP-forming]
trEMBL	tr\|G7IVC3\|G7IVC3_MEDTR	0	Cellulose synthase {ECO:0000256\|RuleBase:RU361116}

Sequence

Transcript Sequence

>Glyur001837s00030385.1
ATGATACCATATGGAAACCTATTTGGGAGGAGAGAATTGCAAGAGTTGAATGGTAAAACATGTCAAATATGTGGAGATGAGACTGGGGTGAATGCAGAGGGTGACCCCTTTGTGGCCTGCAATGAGTGTGCCTTTCCTGTTTGTAGAAACTGTTATGAGTATGAACGCAGGGAAGGAAACAAGGTCTGTCCTCAATGCAAGACCAGATTCAAGCGTCTCAAAGGGTGTGCTAGAGTTGAGGGGGATGAAGAGGAAGATGGCATGGATGACTTGGAGAATGAATTCGATTTTGATGTGCAAATCCCTATGTCTCCTGAGGGTGAGGAAATATCTCAAGAGCATCATGCTATAGTTCCTTCAAGTTCAATCATGAGCAAACAGATAACTACATTGCAAGCAAGGCCTATGGATCCTTCCAAGGACCTAGCTGCTTATGGCTATGGAAGTGTTGCCTGGAAGGAGAGGATGGAGATGTGGAAGCAAAGACAGGGTATACTNGGTAATATGAGAAAAGAAAATAATAATGATGACAATGATGACAAGTTGGCCATCCCATCCAGTAAAATCAATCCTTACCGTATGATCATAATAATAAGACTAGTTGTTCTTGGCTTCTTCTTTCACTATCGAGTTATGCATCCAGTAGAAAATGCCTATGCTTTGTGGCTTGTGTATGAAAAGGAAGGCCAGCCTTCACAACTTTCTCCGATTGACATATTTGTTACCACAGTTGATCCCTTAAGAGAGCCTCCTTTAGTGACTGCAAACACAGTTCTCTCCATTCTAGCTGTAGACTACCCTGCTGAAAAGGTGTCATGTTATGTATCTGATGATGGGGCTGCAATGTTGACATTTGAGGCCTTATCTGAAACTTGTGAATTTGCAAGGAAATGGGTTCCTTTCTGTAAGAAGTATAACATTGAGGCTAGAGCTCCAGAGTGGTATTTTGCTGAGAAAATAAACTATCTAAAAGATAAGGCTAGAAAGGTCCCAGAAGAAGGGTGGACAATGCAAGATGGAACACCATGGCCTGGAAATAACGTTCGTGATCATCCAGGAATGATCCAGGTATTTCTAGGAGAAAGTGGGGGATATGACTTGGATGGAAATGAATTACCACGTTTGGCTATAAGAGAGGCAATGTGTTTCATGATGGATCCATTACAAGGGAAAAGGGTCTGTTATGTTCAGTTCTCACAGAGATTTGATGGATGTGTATTTAGGAGGAAAGCACTCTATGGTTTTGATGCTCCAAGAAAAAAGAGGCCTCCAACCATGACATGCAATTGCTGGCACAAGTGTTGTTGCTGTGGATGGTGTTGCATGGGAAAAACGAAGAAGAATAAGAAGTTGAAGAAACCNAAGTTTGAGATAATGGAGAGTAGTCACAGAAAAGTACATTCTGAAGCATCTATTGCTGAGAATGCATTGAAGTGTATTGAACTTGGCACTAAAGATGAAGTTTTGGCTCCAATCTCAAATCAGAAGTTTGTCAAGAAATATGGACAATCTCCTATTTTCATTGCATCTACTCAATTGGAGGATGGTGAGACACTAAAACATGGCAGTCTTGCTTCCCAACTTACAGAAGCCATTCATGTTGGGTGGATCTATGGTTCAGTTACAGAAGATATATTGACAGGTTTCAAAATGCACTGCCATGGATGGAGATCAATATATTGTATTCCTGAAAGGCCTGCATTTAAAGTATCTCCCTNAAGAAACCTTTCCAATGGTCTACAACAAGTGTTTCATTGGGCCCTTGGTTCCATTGACATATTCATGAGTAAACACTGCCCTCTTTGGTATGGATATAAAGGAGGACTAAAGTGGTTAGAGAGGATTTCTTACATAAATGCTACAGTGTATCCTTGGACATCAATACCTTTGGTGGCATATTGCACACTGCCTGCGGTTTGCTTGCTTACTGGGAAATTTATCATTCCTGAGCTCAGTAACACAGCTGNCATGTGGTTTCTGTCTCTTTTCATTTGCATTTTCTCAACAAGTGTGCTAGAGATGAGATGGGGTGGAGTCACAGTTGATGAATGGTGGAGAAATGAGCAGTTCTGGGTGATTGGAGGGGTTTCAGCACACTTGTTTGCTGTGTTTGTAGGGCTGTTCAAGGTTTTCACAGGTGTGAATCCCAGCTTCATTGTGACATCATCATCAAGAGTAGTAGGAGATGATGATAATGACAACAAGGAGCATTCTGAGATGATGTTTGGTTTGAAGTGGACAACTTTGCTAATCATACCAACAACATTGCTAATACTAAACATAATTGCTATAGTTGCTGGGGTCTCACATGCAATAAACAATGGATTTCAATNATGGGGGTCTCTAATTGGGAAACTTTTGTTTTCCTTGTGGGTGATCCTTCACTTGTATCCATTCCTCAAAGGCATGACTGGTAGGCATAATAACAGGACTCCTACCATTGTTCTTGTGTGGTCAATCTTGCTGGCCTCTTTCTTCTCTGTCTTGTGGGTTAAGATTGATCCATTTTTGCCCAAGTCTGATGGTCCAATTCTAGAAGAATGTGGATTGGATTGCAATTAG

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold01837	21860	31889	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0030244 cellulose biosynthetic process

cellular_component GO:0016020 membrane molecular_function GO:0005515 protein binding GO:0008270 zinc ion binding GO:0016760 cellulose synthase (UDP-forming) activity "

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001837s00030385.1	PF14569.1	zf-UDP	11	89	1.30E-36
Glyur001837s00030385.1	PF03552.9	Cellulose_synt	237	328	1.10E-49
Glyur001837s00030385.1	PF03552.9	Cellulose_synt	404	844	1.10E-166

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.019
SRR1783600	control	0.023
SRR1783602	moderate drought stress	0.054
SRR1811619	moderate drought stress	0.044

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.127
DRR006520	Root Summer glycyrrhizin high producing strain	0.125
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.193
DRR006524	Root Summer glycyrrhizin low producing strain	0.243
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.177
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.136

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	2.429
SRR2868004	Drought Stress(Tissue:root)	1.802
SRR2967015	Control (Tissue:root)	1.517

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.302
SRR9715740	Leave	0.050
SRR9715741	Leave	0.018
SRR9715739	Root	0.000
SRR9715742	Root	0.378
SRR9715743	Root	0.031

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.439
SRR8400027	Control-Root	0.293