Gene detail information of Glyur001837s00030387.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G25230.20RPM1 interacting protein 2
NRXP_003598144.10E3 ubiquitin-protein ligase synoviolin [Medicago truncatula]
Swissprottr|Q8VYC8|RIN2_ARATH0E3 ubiquitin protein ligase RIN2
trEMBLtr|G7IVC2|G7IVC2_MEDTR0E3 ubiquitin protein ligase RIN2 {ECO:0000313|EMBL:AES68395.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold018373315740798-


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K10636AMFR, GP78 EC:2.3.2.27 Protein processing in endoplasmic reticulum map04141


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001837s00030387.2PF13639.1zf-RING_23363806.00E-12


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control25.163
SRR1783600control25.352
SRR1783602moderate drought stress21.406
SRR1811619moderate drought stress21.217

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain28.445
DRR006520Root Summer glycyrrhizin high producing strain28.322
DRR006521Root Winter glycyrrhizin high producing strain46.092
DRR006522Root Winter glycyrrhizin high producing strain44.799
DRR006523Root Summer glycyrrhizin low producing strain24.521
DRR006524Root Summer glycyrrhizin low producing strain24.258
DRR006525Leaf Summer glycyrrhizin high producing strain17.496
DRR006526Leaf Summer glycyrrhizin high producing strain17.435

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)52.725
SRR2868004Drought Stress(Tissue:root)63.694
SRR2967015Control (Tissue:root)53.043

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave26.280
SRR9715740Leave29.259
SRR9715741Leave30.567
SRR9715739Root38.092
SRR9715742Root37.353
SRR9715743Root36.881

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h26.495
SRR8749028MeJA induced 9h31.847
SRR8749029MeJA induced 9h19.774
SRR8749030Uninduced40.217
SRR8749031Uninduced30.657
SRR8749032Uninduced24.226

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root59.186
SRR8400027Control-Root56.615

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved