Gene detail information of Glyur001838s00038467.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G63090.4 | 8.00E-59 | Lateral organ boundaries (LOB) domain family protein |
| NR | XP_003549607.2 | 1.11E-103 | PREDICTED: protein LATERAL ORGAN BOUNDARIES-like isoform X1 [Glycine max] |
| Swissprot | tr|Q9FML4|LOB_ARATH | 2.00E-78 | Protein LATERAL ORGAN BOUNDARIES |
| trEMBL | tr|K7KMS9|K7KMS9_SOYBN | 6.00E-104 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G02530.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01838 | 23302 | 23904 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | LOB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001838s00038467.1 | PF03195.9 | DUF260 | 10 | 108 | 5.20E-42 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.063 |
| SRR1811619 | moderate drought stress | 0.063 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.180 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.178 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.171 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.183 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.184 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.128 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.183 |
| SRR2967015 | Control (Tissue:root) | 0.171 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.159 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.187 |
| SRR9715739 | Root | 0.167 |
| SRR9715742 | Root | 0.541 |
| SRR9715743 | Root | 0.153 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.229 |
| SRR8400027 | Control-Root | 0.855 |