Gene detail

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Gene detail information of Glyur001838s00038470.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G24670.2	4.00E-133	tryptophan aminotransferase related 2
NR	KHN34341.1	0	Tryptophan aminotransferase-related protein 2 [Glycine soja]
COG	YP_008618707.1	5.00E-07	Histidinol-phosphate aminotransferase [Tepidanaerobacter acetatoxydans Re1]
Swissprot	tr\|Q94A02\|TAR2_ARATH	2.00E-173	Tryptophan aminotransferase-related protein 2
trEMBL	tr\|K7KMS8\|K7KMS8_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA05G02521.1}

Sequence

Transcript Sequence

>Glyur001838s00038470.1
TTTTTTCTTTGTCCATTGCCACTTATGTCCATCGAAACTGGTTGAGCATTTCTGAATATTTTCAAGGGTGGACTCAAATTCTATAAGTTCCACTCTGCTACTTTTTCTGAAACCGAGTTCTTTTGAAACCTGACAAACCTTGCTGATTGTTATCGTCACACAAAACAATAAGAATTCCGAATAATCCTCCAAAACGTTACTTTGAATTGTTATTAGAATATTCTTTCTTTCATTGCAGAAAAATAACCGTTTTAGTTTCAGGATTTTCAGCCCTGACCTGAGGGTGGGGGAACTGCAAGCTATTAACTTCACCCAACACCTGTCGCAATAAAAAGTCTCTTGTTATTTATTGCTTCCGTGGTCTATTACAGGGGTGTGTTCTGTTCTGTTTTGGTTTCTGTTTGTGTTGTTTGGAGAGATGGCGAATCTTCCAGCTATGTTCTCCNTGAGGCACTTCCTGGTGTTGTCGCTGGCTCTGAATGTCAGTTTGATCCTGAGAATGGTGTACGAGGGCGAAGAATTAGGCAACAACAGGTGTAGCTCGAAGAAACCGATGGTGGGTACTACTGATGCTAAATCTAGAAGAAAGGGGAATATTATCAACAAATCACGTTTGGCTATATCCCCTGGTACTTCTTCTTCTTTCGCTNATTACACCCGTACAGATCAATCCGGAGGCAGGGAAACTGTAATCAACGTTGATCATGGAGATCCAACAATGTATGAAAGATTTTGGCGACGAATGGGTGACAGGACCACAATCATAATTCCCGGATGGCAATCAATAAGCTATTTTTCTGATGTAACAAACATTTGCTGGTTTCTAGAGCCTGAGTTTGGAAAGCAAGTGTTGAGGTTGCACAAAGTGGTGGGCAATGCAGTCACAGAAGGTCGCCATGTTGTTGTTGGAACAGGTTCCTCTCAGCTAATTCTGGCTGCTCTTTATGCTTTGTCCTCCCCTGATGCTGCCGAATCAATCAACGTCGTATCTGCCGTACCCTATTACTCGTCGTACCCATCAATGGCAGATTACCAGAAATCAGGTCTTTACAAATGGGCTGGTGATGCAGAGAGTTTTGACAGAGATGGTCCTTACATTGAGCTGGTTACTTCTCCCAATAATCCTGATGGATCTTCAAAGCAACCTGTTGTCAACCGAAGCCAGGGACTATTGATCCATGACCTTGCCTATTATTGGCCGCAATATACCCCAATATTATCTGCTTCAGATCATGATCTTACGCTTTTCACTGTCTCAAAAAGCACTGGTCACGCAGGAATGCGCATAGGGTGGGCTCTTGTGAAAGACCAAGAGGTAGCAAAGAAAATGACTAAATTCATAGAGCTAAATACAATTGGTGTCTCAAAGGATTCTCAGCTCAGAGCTGCCAAGGTTTTAAAGACAGTATCTGACANCTGCGAAGAAGAAAACTCCCAAGAGGGGGAATCGTTTTTCAAGTACAGCTACAACANCATGGCGCAAAGGTGGAAGCTACTGAGAGCAGCAGTTGAGGGTGGTGAATTATTCAGTTTGCCACAATTTTCTCCTGGATTCTGCACCTTTTTCAATCAGGAGACAGAGCCTCAACCAGCTTTTGCGTGGTTGAAGTGTGAGGGGGAAATAGAGGACTGCGAAAAGTTCCTTCGAGGACACAAGATTTTAACCAGAAATGGTAGACAATTTGGGGCTAGCCCAAAATATGTGAGAATTAGCATGCTGGATACAGATGAAAATTTTGCCCAGTTAATAGATAGGCTATCTTCCATACAGCAGTGA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold01838	31375	41099	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K16903	TAA1	EC:2.6.1.99	Tryptophan metabolism	map00380

Gene Ontology

molecular_function

GO:0003824 catalytic activity

GO:0016846 carbon-sulfur lyase activity

GO:0030170 pyridoxal phosphate binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001838s00038470.1	PF04864.8	Alliinase_C	92	450	4.00E-151

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.231
SRR1783600	control	0.174
SRR1783602	moderate drought stress	0.125
SRR1811619	moderate drought stress	0.177

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.110
DRR006520	Root Summer glycyrrhizin high producing strain	0.060
DRR006521	Root Winter glycyrrhizin high producing strain	0.423
DRR006522	Root Winter glycyrrhizin high producing strain	0.244
DRR006523	Root Summer glycyrrhizin low producing strain	0.061
DRR006524	Root Summer glycyrrhizin low producing strain	0.062
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.953
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.742

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	9.348
SRR2868004	Drought Stress(Tissue:root)	10.854
SRR2967015	Control (Tissue:root)	6.697

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	6.566
SRR9715740	Leave	4.589
SRR9715741	Leave	2.873
SRR9715739	Root	0.018
SRR9715742	Root	0.642
SRR9715743	Root	0.327

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.266
SRR8749028	MeJA induced 9h	0.254
SRR8749029	MeJA induced 9h	0.154
SRR8749030	Uninduced	0.192
SRR8749031	Uninduced	0.242
SRR8749032	Uninduced	0.043

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	1.037
SRR8400027	Control-Root	1.472